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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cagra.0537s0004.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
YABBY |
| Protein Properties |
Length: 180aa MW: 19506.2 Da PI: 10.0017 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.0537s0004.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 137.8 | 1.3e-42 | 15 | 155 | 5 | 163 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94
++e++ yv+C+ Cntilav +P + ++ +vtv+CGhC +l ++ + + + h + l + +++ + k+ s+s+
Cagra.0537s0004.1.p 15 PQAEHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNLSFLTTSP-----PLQGH--------VS--LTLQMQSFGGSEYKKGSSSS 89
5789***********************************975533322.....22232........32..33344556666666666666 PP
YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
s ss +++++ +p +p v++PPek+qr Psaynrf+++eiqrik++nP+i hreafsaaaknWa +
Cagra.0537s0004.1.p 90 SSSS---TSSDQPPSPTPPFVVKPPEKKQRLPSAYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKY 155
6555...3456667787788***********************************************86 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 180 aa
Download sequence Send
to blast |
MNLEEKPTMT SKASPQAEHL YYVRCSICNT ILAVGIPLKR MLDTVTVKCG HCGNLSFLTT 60
SPPLQGHVSL TLQMQSFGGS EYKKGSSSSS SSSTSSDQPP SPTPPFVVKP PEKKQRLPSA 120
YNRFMRDEIQ RIKSANPEIP HREAFSAAAK NWAKYIPNSP TSLTSGGHNI HGLGFGEKK*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor required for the initiation of nectary development. Also involved in suppressing early radial growth of the gynoecium, in promoting its later elongation and in fusion of its carpels by regulating both cell division and expansion. Establishes the polar differentiation in the carpels by specifying abaxial cell fate in the ovary wall. Regulates both cell division and expansion. {ECO:0000269|PubMed:10225997, ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:10535738, ECO:0000269|PubMed:11714690, ECO:0000269|PubMed:15598802, ECO:0000269|Ref.10}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated by SPT and by A class genes AP2 and LUG in the outer whorl. In the third whorl, B class genes AP3 and PI, and the C class gene AG act redundantly with each other and in combination with SEP1, SEP2, SEP3, SHP1 and SHP2 to activate CRC in nectaries and carpels. LFY enhances its expression. {ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:15598802}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ119055 | 0.0 | DQ119055.1 Brassica juncea transcription factor CRC mRNA, complete cds. |
| Publications
? help Back to Top |
- Fourquin C,Primo A,Martínez-Fernández I,Huet-Trujillo E,Ferrándiz C
The CRC orthologue from Pisum sativum shows conserved functions in carpel morphogenesis and vascular development.
Ann. Bot., 2014. 114(7): p. 1535-44
[PMID:24989787] - Pfannebecker KC,Lange M,Rupp O,Becker A
Seed Plant-Specific Gene Lineages Involved in Carpel Development.
Mol. Biol. Evol., 2017. 34(4): p. 925-942
[PMID:28087776] - Yamaguchi N,Huang J,Xu Y,Tanoi K,Ito T
Fine-tuning of auxin homeostasis governs the transition from floral stem cell maintenance to gynoecium formation.
Nat Commun, 2017. 8(1): p. 1125
[PMID:29066759] - Yamaguchi N, et al.
Chromatin-mediated feed-forward auxin biosynthesis in floral meristem determinacy.
Nat Commun, 2018. 9(1): p. 5290
[PMID:30538233]
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