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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.0534s0046.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
NAC |
Protein Properties |
Length: 418aa MW: 47293 Da PI: 6.6822 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.0534s0046.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 163.7 | 6.7e-51 | 54 | 179 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
+pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+
Cagra.0534s0046.1.p 54 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRM 142
79***************************.89***************888889************************************* PP
NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+ s++++ +glkktLvfy+g+apkg++t+W+m+eyrl
Cagra.0534s0046.1.p 143 IRSETSRPIGLKKTLVFYSGKAPKGTRTSWIMNEYRL 179
***********************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 418 aa
Download sequence Send
to blast |
MAIVSSTTSI IPMSNQVNNN EKGVEEDGHD RGGGHESHVQ NDDEADDHDH DMVMPGFRFH 60 PTEEELIEFY LRRKVEGKRF NVELITFLDL YRYDPWELPA MAAIGEKEWY FYVPRDRKYR 120 NGDRPNRVTT SGYWKATGAD RMIRSETSRP IGLKKTLVFY SGKAPKGTRT SWIMNEYRLP 180 HHETEKYQKA EISLCRVYKR PGVEDHPSLP RSLSTRHHHN HNSSSSSSRL ALRQQQHHSS 240 SSNHSGNNLN NNNNNMNNLE KLSTEYSGDG STTTTTNSNS DVTIALANQN IYRPMPYGSS 300 NNTSIISTST QEDDETAIVD DLQRLVNYQI SDGGNINHQY FQIAQQFHHN QQQNANVNAL 360 QLVAAATTAA ALTPQTQATL AMSMIPAGTI PNNALWDMWN PMVPDGNRDH YTNIPFK*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 7e-57 | 44 | 200 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-57 | 44 | 200 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-57 | 44 | 200 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-57 | 44 | 200 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-57 | 44 | 200 | 11 | 168 | NAC domain-containing protein 19 |
3swm_B | 8e-57 | 44 | 200 | 11 | 168 | NAC domain-containing protein 19 |
3swm_C | 8e-57 | 44 | 200 | 11 | 168 | NAC domain-containing protein 19 |
3swm_D | 8e-57 | 44 | 200 | 11 | 168 | NAC domain-containing protein 19 |
3swp_A | 8e-57 | 44 | 200 | 11 | 168 | NAC domain-containing protein 19 |
3swp_B | 8e-57 | 44 | 200 | 11 | 168 | NAC domain-containing protein 19 |
3swp_C | 8e-57 | 44 | 200 | 11 | 168 | NAC domain-containing protein 19 |
3swp_D | 8e-57 | 44 | 200 | 11 | 168 | NAC domain-containing protein 19 |
4dul_A | 7e-57 | 44 | 200 | 8 | 165 | NAC domain-containing protein 19 |
4dul_B | 7e-57 | 44 | 200 | 8 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT000874 | 0.0 | BT000874.1 Arabidopsis thaliana clone C104984 putative NAM (no apical meristem) protein (At2g02450) mRNA, complete cds. |