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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cagra.0534s0030.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
Whirly |
| Protein Properties |
Length: 270aa MW: 29893 Da PI: 9.8146 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.0534s0030.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 216.1 | 3.3e-67 | 91 | 230 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpa.akgsneGk 89
s+yk+kaal+v++++p+f+al+sg++kl+++G+lll++a+a+++r+ydW++kq+f+ls+te+++l++l+++esceffhdp+ kgs+eGk
Cagra.0534s0030.1.p 91 SIYKGKAALTVEPRAPEFVALESGAFKLTKEGFLLLQFAPAAGVRQYDWSRKQVFSLSVTEIGNLISLGPRESCEFFHDPFkGKGSDEGK 180
7********************************************************************************44679**** PP
Whirly 90 vrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
vrk+lkvePlpdGsG f+nlsv+n l++++e++++P++kaefavl+s+++
Cagra.0534s0030.1.p 181 VRKVLKVEPLPDGSGRFFNLSVQNRLLNVDENVYIPITKAEFAVLISAFN 230
***********************************************996 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 270 aa
Download sequence Send
to blast |
MSQLLSSPPM AVFSETFVNH QFTDARFLSS HSILTSGGFA GKIVPLKPTA RLKLTVKSRQ 60
GDYFEKQRFG DSSSPPQNTE GSSPRFYVGH SIYKGKAALT VEPRAPEFVA LESGAFKLTK 120
EGFLLLQFAP AAGVRQYDWS RKQVFSLSVT EIGNLISLGP RESCEFFHDP FKGKGSDEGK 180
VRKVLKVEPL PDGSGRFFNL SVQNRLLNVD ENVYIPITKA EFAVLISAFN FILPHLIGWN 240
TFATSIKPED SNRLNNASPK YGGDYEWSR*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In the nucleus, is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:19669906}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT015336 | 0.0 | BT015336.1 Arabidopsis thaliana At2g02740 gene, complete cds. |
| GenBank | BT015641 | 0.0 | BT015641.1 Arabidopsis thaliana At2g02740 gene, complete cds. |
| Publications
? help Back to Top |
- Lepage É,Zampini É,Brisson N
Plastid genome instability leads to reactive oxygen species production and plastid-to-nucleus retrograde signaling in Arabidopsis.
Plant Physiol., 2013. 163(2): p. 867-81
[PMID:23969600] - Zampini É,Lepage É,Tremblay-Belzile S,Truche S,Brisson N
Organelle DNA rearrangement mapping reveals U-turn-like inversions as a major source of genomic instability in Arabidopsis and humans.
Genome Res., 2015. 25(5): p. 645-54
[PMID:25800675] - Karpinska B,Alomrani SO,Foyer CH
Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling.
Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018.
[PMID:28808105]
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