 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cagra.0509s0002.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
Trihelix |
| Protein Properties |
Length: 541aa MW: 62818.4 Da PI: 9.304 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.0509s0002.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 51.7 | 2.2e-16 | 101 | 173 | 2 | 80 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80
W+ +evlaL+++r+ +e+++ + We+ s+k++e gf+rsp++Ckek+e+ ++ry + ++++++ s+++++++
Cagra.0509s0002.1.p 101 WCSDEVLALLRFRSTVENWFPEF-----TWEHTSRKLAEVGFKRSPQECKEKFEEEERRYFNGNNNNNNT-SDHHQHIS 173
********************998.....9************************************99985.56555555 PP
|
| 2 | trihelix | 104.5 | 7.5e-33 | 442 | 531 | 1 | 86 |
trihelix 1 rWtkqevlaLiearr...emeerlrr..gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85
rW+k+evlaLi++rr +m+++ ++ ++++ plWe++skkm e g++rs+k+Ckekwen+nk+++k+k+ +kkr + +s+tcpyf+ql
Cagra.0509s0002.1.p 442 RWPKDEVLALINIRRnisNMNDDGNSspSSKAVPLWERISKKMLELGYKRSAKRCKEKWENINKYFRKTKDVNKKR-PLDSRTCPYFHQL 530
8**************55533333333225799*******************************************8.9***********9 PP
trihelix 86 e 86
+
Cagra.0509s0002.1.p 531 T 531
8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0001158 | Molecular Function | enhancer sequence-specific DNA binding |
| GO:0005516 | Molecular Function | calmodulin binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 541 aa
Download sequence Send
to blast |
MFDGGVPEQI HRFITSPPPP ASPLPPHQPA AERSLPFPAS FASFNTNHHQ AQHILSLDSR 60
KIIHHHHHHH HHDIKDSGVA TTAEWIGHTD HDGSDNHHHP WCSDEVLALL RFRSTVENWF 120
PEFTWEHTSR KLAEVGFKRS PQECKEKFEE EERRYFNGNN NNNNTSDHHQ HISNYNNKGN 180
SYRIFSEVEE FYDGHVSPEV GDNQNKRTNS LERKGNVEET GQDLMDEDKL RDQDQGQVEE 240
ASMGNKMNLI DVGKVVEDDV KSSSSSSLMM VMREKKKKKR KRKKEKERFG VLKGFCEGLV 300
RNMIAQQEEM HKKLLEDMAK KEEEKIAREE DWKKQEMERV NKELEIRKQE QAMASDRNTN 360
IIKFISKFTD HDLDQDLSSL ALPQTQGRRK KFQTSSSPLL HQTLTPLTTD KSLQPIPTKT 420
LKTKTQNPKP PKSEDKSDLG KRWPKDEVLA LINIRRNISN MNDDGNSSPS SKAVPLWERI 480
SKKMLELGYK RSAKRCKEKW ENINKYFRKT KDVNKKRPLD SRTCPYFHQL TALYSQPSTG 540
T
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 272 | 283 | REKKKKKRKRKK |
| 2 | 274 | 283 | KKKKKRKRKK |
| 3 | 275 | 280 | KKKKRK |
| 4 | 275 | 283 | KKKKRKRKK |
| 5 | 277 | 282 | KKRKRK |
| 6 | 277 | 283 | KKRKRKK |
| 7 | 278 | 286 | KRKRKKEKE |
| 8 | 279 | 283 | RKRKK |
| 9 | 279 | 284 | RKRKKE |
| 10 | 279 | 285 | RKRKKEK |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK227285 | 0.0 | AK227285.1 Arabidopsis thaliana mRNA for GTL1 - like protein, complete cds, clone: RAFL11-11-K16. |
