PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0495s0060.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 357aa    MW: 39908.9 Da    PI: 6.6568
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0495s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-07124144526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C++f++ G C+ Gd+C FaHg
  Cagra.0495s0060.1.p 124 ACPDFRK-GGCSKGDSCEFAHG 144
                          7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.12776108IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-5119145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.019120146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-6123146IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-6124144IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.146154178IPR000571Zinc finger, CCCH-type
SMARTSM003560.75154177IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MMIGETRRAY PTVEIPPWPS CEDFTSADLF SPAMNSPDCS MLEALAALQR YLPSNEMDPD  60
SDPDLLGPDS PIDAYSCNHF RMYDFKVRRC ARGRSHDWTE CPYAHPGEKA RRRDPRKYHY  120
SGTACPDFRK GGCSKGDSCE FAHGVFECWL HPARYRTQPC KDGGSCRRRV CFFAHSPDQL  180
RFLSNRSPDR VDSFDVSSPI RARAFQLSIS PVSGSPPMSP RADSESSPMA QSLSRSLGSC  240
SINDVVPSFR SLQFSKVKSF PHNNLLFGFG SPRGSILGPG FQSLPTTPTR PGNLDIWEHG  300
LEEEPVMERV VESGRELREK MREKLHKENC MDRVDPGLEQ GMGDGPDVGW VSDLLM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0495s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546020.0AC254602.1 Capsella rubella clone CAP08-D12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023634206.10.0zinc finger CCCH domain-containing protein 49
SwissprotQ9M0G20.0C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLR0H5240.0R0H524_9BRAS; Uncharacterized protein
STRINGCagra.0495s0060.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.10.0C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]