PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0483s0087.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 304aa    MW: 34259.1 Da    PI: 4.755
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0483s0087.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-1993144156
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          ++y+GVr++k +g+++AeIrdps+   r r++lg+f taeeAa a+++a+ +l+g+
  Cagra.0483s0087.1.p  93 KKYRGVRQRK-WGKFAAEIRDPSS---RSRIWLGTFVTAEEAAMAYDRAAIQLKGH 144
                          59*******9.**********965...4************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.06E-3093150No hitNo description
Gene3DG3DSA:3.30.730.104.5E-3094150IPR001471AP2/ERF domain
SMARTSM003801.8E-3594157IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-2194151IPR016177DNA-binding domain
PfamPF008471.3E-1294144IPR001471AP2/ERF domain
PROSITE profilePS5103221.91894151IPR001471AP2/ERF domain
PRINTSPR003674.0E-1095106IPR001471AP2/ERF domain
PRINTSPR003674.0E-10117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MERRTRRVKF SEHRTVTTVS AKPTDDSPTL VRITVTDPFA TDSSSSDEDN NVTVAAPRVK  60
RYVEEIRFCQ IQPSPKAKHK AEKAVVDDVS SPKKYRGVRQ RKWGKFAAEI RDPSSRSRIW  120
LGTFVTAEEA AMAYDRAAIQ LKGHKALTNF LTPPSPTPVI DLDTVSACDS GKDSRHSLHS  180
PTSVLRFNAN EETEYRTEHD IEPIELSPEI KPTALVKSES STSLLFPDPY QLPDLSLAGE  240
CFWDSEIAPD LLFLDEELKL QPPLPNIEIS KEESEDFSFS LNEDFESSPW DVDNFFDQHH  300
SFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2293150462ATERF1
3gcc_A2e-2293150462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0483s0087.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291551.10.0ethylene-responsive transcription factor CRF6
SwissprotQ9M3741e-144CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLR0H5A30.0R0H5A3_9BRAS; Uncharacterized protein
STRINGCagra.0483s0087.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.11e-136cytokinin response factor 6