PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0463s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 25130.1 Da PI: 5.6451 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.3 | 4.7e-15 | 12 | 59 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd l ++v ++G g W++I+ + g++R++k+c++rw++yl Cagra.0463s0007.1.p 12 RGAWTAEEDSLSRECVDKYGEGKWHLIPLRTGLNRCRKSCRLRWLNYL 59 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.4 | 1.8e-14 | 65 | 109 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr +E +l+++++++lG++ W++Ia +++ gRt++++k++w+++ Cagra.0463s0007.1.p 65 RGRLNSDEIDLIIRLHNLLGNR-WSLIAGRIP-GRTANDIKNYWNTH 109 788899****************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-19 | 6 | 61 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.638 | 7 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-25 | 9 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-11 | 11 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-13 | 12 | 59 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.38E-10 | 14 | 59 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 62 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-11 | 64 | 112 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 15.831 | 64 | 114 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.1E-13 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.01E-10 | 71 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MDAPMSNNGL RRGAWTAEED SLSRECVDKY GEGKWHLIPL RTGLNRCRKS CRLRWLNYLK 60 PGIKRGRLNS DEIDLIIRLH NLLGNRWSLI AGRIPGRTAN DIKNYWNTHF CKKQDMSGKN 120 KMGERNPSSS GATPPPQIDV INPQHGSFSD NNSCSHVNGF PEVELGGIIN TDHIVTCDQD 180 EEKYGSTNNE MVGESVWWES WLEDSVEVDP EAMITDEAGP SSM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-21 | 10 | 115 | 5 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0463s0007.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010513543.1 | 1e-122 | PREDICTED: transcription factor MYB90-like | ||||
Swissprot | Q9FNV9 | 3e-82 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | E5D8F5 | 2e-87 | E5D8F5_BRAOB; MYB2 | ||||
STRING | Cagra.0463s0007.1.p | 1e-165 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-84 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0463s0007.1.p |
Publications ? help Back to Top | |||
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