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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.0463s0004.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
HD-ZIP |
Protein Properties |
Length: 200aa MW: 23023 Da PI: 6.7962 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.0463s0004.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 56.4 | 5.2e-18 | 60 | 114 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+k+ ++t+eql Le +F+++ ++++e++ +L+k+lgL+ rq vWFqNrRa++k
Cagra.0463s0004.1.p 60 KKKKRLTSEQLASLEICFQEDIKLDTERKLKLSKELGLQPRQTAVWFQNRRARWK 114
57778*************************************************9 PP
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2 | HD-ZIP_I/II | 111.7 | 4.8e-36 | 60 | 151 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
+kk+rl++eq+++LE +F+e+ kL++erK +l++eLglqprq avWFqnrRAR+k k+lE+ y++L+++yd++ +e+++L++ev++Lr+
Cagra.0463s0004.1.p 60 KKKKRLTSEQLASLEICFQEDIKLDTERKLKLSKELGLQPRQTAVWFQNRRARWKVKHLEESYNSLRQEYDNVWREKQMLHDEVRKLRAI 149
59*************************************************************************************976 PP
HD-ZIP_I/II 91 lk 92
++
Cagra.0463s0004.1.p 150 IQ 151
65 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 200 aa
Download sequence Send
to blast |
MPSPGLESNG WLHSFSYDPY AGNSYTHAAM ETGPVITVPE SEMMINTYQC DPSNNDEMIK 60 KKKRLTSEQL ASLEICFQED IKLDTERKLK LSKELGLQPR QTAVWFQNRR ARWKVKHLEE 120 SYNSLRQEYD NVWREKQMLH DEVRKLRAII QRDQGLMMNN NQIAGGDHTN NGIGEYNSPM 180 MVGSSHVLWP GISQPPNPW*
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Functional Description ? help
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Source |
Description |
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KM214233 | 1e-135 | KM214233.1 Capsella grandiflora isolate C.g926a RCO-A (RCO-A) gene, complete cds. |
GenBank | KM214234 | 1e-135 | KM214234.1 Capsella grandiflora isolate C.g926b RCO-A (RCO-A) gene, complete cds. |