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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.0450s0030.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
MIKC_MADS |
Protein Properties |
Length: 198aa MW: 22262.4 Da PI: 6.5544 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.0450s0030.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 69.9 | 2.3e-22 | 9 | 56 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
krienks rqvtfskRrng++ KA LS+LCd vav+++s +gkly
Cagra.0450s0030.1.p 9 KRIENKSSRQVTFSKRRNGLIDKARQLSILCDSSVAVVVVSASGKLYN 56
79********************************************96 PP
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2 | K-box | 36.1 | 2.8e-13 | 95 | 164 | 29 | 98 |
K-box 29 enLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
e L+ q +l ++++Ls+ L +Le+qLe++l+ R++K+el++e+++ lq e+ l+een+ L +++
Cagra.0450s0030.1.p 95 ELLEIVQSNLEETNINNLSVDFLISLEEQLENALSVSRARKTELMMESLKSLQGEENLLREENQVLASQM 164
66777888899999***************************************************99876 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 198 aa
Download sequence Send
to blast |
MGRRKIEIKR IENKSSRQVT FSKRRNGLID KARQLSILCD SSVAVVVVSA SGKLYNSCSG 60 DDMSKIIERY EIQHADELKA LDLAEKTRNY LPHKELLEIV QSNLEETNIN NLSVDFLISL 120 EEQLENALSV SRARKTELMM ESLKSLQGEE NLLREENQVL ASQMGKKNTF LATEDERGIS 180 PKNSSGNQIP ETLPLLK*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that prevents vernalization by short periods of cold. Acts as a floral repressor. {ECO:0000269|PubMed:12724541, ECO:0000269|PubMed:19139056, ECO:0000269|PubMed:20551443}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Requires EARLY FLOWERING 7 (ELF7) and ELF8 to be expressed. Up-regulated by HUA2. {ECO:0000269|PubMed:15520273, ECO:0000269|PubMed:15659097}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF342808 | 0.0 | AF342808.1 Arabidopsis thaliana MADS affecting flowering 1 (MAF1) mRNA, complete cds. |
GenBank | AK117577 | 0.0 | AK117577.1 Arabidopsis thaliana mRNA for (NM_148660) MADS affecting flowering 1(MAF1); protein id: At1g77080.4, supported by cDNA: 92459., supported by cDNA: gi_13649968, supported by cDNA: gi_16580104 [Arabidopsis thaliana] gb|AAK37527.1|AF342808_1 (AF342808) MADS affecting flowering 1 [Arabidopsis thaliana] gb|AAK54440.1| (AY034083) MADS box FLC1-like nuclear protein [Arabidopsis thaliana] gb|AAM67028.1| (AY088709) MADS affecting flowering 1 [Arabidopsis thaliana], complete cds, clone: RAFL17-22-J12. |
GenBank | AK175247 | 0.0 | AK175247.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-67-N06. |
GenBank | AK176270 | 0.0 | AK176270.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL23-17-J21. |
GenBank | AK227948 | 0.0 | AK227948.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-50-E05. |
GenBank | AY034083 | 0.0 | AY034083.1 Arabidopsis thaliana MADS box FLC1-like nuclear protein (FK1) mRNA, complete cds. |
GenBank | AY088709 | 0.0 | AY088709.1 Arabidopsis thaliana clone 92459 mRNA, complete sequence. |
GenBank | BT004598 | 0.0 | BT004598.1 Arabidopsis thaliana At1g77080 gene, complete cds. |