PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0448s0009.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 591aa    MW: 67268.2 Da    PI: 5.1307
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0448s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS395.36.7e-1212165861374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          +++lL++cA+av+s d+ +a + L++++e++s +gd++qRl  +++eAL+arl+++   ++  + + + s +++++ l+a+k f++++P+
  Cagra.0448s0009.1.p 216 MRDLLMQCAQAVASFDQFRAFEKLKEIREHSSIRGDATQRLGYHLAEALEARLTGT---MSTPI-SATYSITSMVDILKAYKGFVQACPT 301
                          5799***************************************************3...33222.3333335589*************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          l+++++taN++I e + +++++HiiDf+i +G+QWp+L++aL++R++gpp lR+Tg++ p+sg   +e+++etg+rL++f+++++vpfe+
  Cagra.0448s0009.1.p 302 LRMCYFTANRTIFELAPKATTLHIIDFGILYGFQWPCLIKALSNREGGPPLLRVTGIELPQSGfrPSERVQETGKRLKRFCDKFKVPFEY 391
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +  +ak++ed++l+eL +++gE+++Vn++l+l++++de+ +l+s+rd+vLkl+++++P+++v++e +  +ns+ Fl+rf eal ++salf
  Cagra.0448s0009.1.p 392 SY-IAKKWEDITLDELVINTGETTVVNCILRLQYTPDETITLNSPRDTVLKLFRDINPNLFVFAEINGTYNSPFFLTRFREALFHCSALF 480
                          **.7************************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          d++e++lp+e++ r+ vErel+ r++++vvaceg+er++r et+++W+ r+ +aGFkp++l++ ++k+ k l+++ + + + +++++++l
  Cagra.0448s0009.1.p 481 DMYETTLPEEDDCRTHVERELIVRDAMSVVACEGSERFARPETYKQWQVRILRAGFKPAKLNKLIVKEGKELVKQRYHKDFVIDNDNHWL 570
                          *****************************************************************************888********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          ++gWk++ L++vS+W+
  Cagra.0448s0009.1.p 571 LQGWKGKILYAVSCWK 586
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.455190566IPR005202Transcription factor GRAS
PfamPF035142.3E-118216586IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MDAVLQVQVD GFRFENGSGS CCKPRNNNLE SDTIINSFIC FNESDESQSS NSSPTESTAC  60
SDYLPVFKYI NDMLMEEDLE GQPCMLVDSL ALQAAEKSFY EVLQDPSPPT SSDQIFGDLD  120
QPNLDFVGLP EVTSDESTRR YRHRDDDDED DDDLEGGRKK KLPAISTADE LAEKYEEVLL  180
ICQKKTQGEA SPNKTGRVKS SSNRSKQQKS DQPVDMRDLL MQCAQAVASF DQFRAFEKLK  240
EIREHSSIRG DATQRLGYHL AEALEARLTG TMSTPISATY SITSMVDILK AYKGFVQACP  300
TLRMCYFTAN RTIFELAPKA TTLHIIDFGI LYGFQWPCLI KALSNREGGP PLLRVTGIEL  360
PQSGFRPSER VQETGKRLKR FCDKFKVPFE YSYIAKKWED ITLDELVINT GETTVVNCIL  420
RLQYTPDETI TLNSPRDTVL KLFRDINPNL FVFAEINGTY NSPFFLTRFR EALFHCSALF  480
DMYETTLPEE DDCRTHVERE LIVRDAMSVV ACEGSERFAR PETYKQWQVR ILRAGFKPAK  540
LNKLIVKEGK ELVKQRYHKD FVIDNDNHWL LQGWKGKILY AVSCWKPAKK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-432065879380Protein SCARECROW
5b3h_A1e-432065878379Protein SCARECROW
5b3h_D1e-432065878379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0448s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290802.10.0scarecrow-like protein 30 isoform X1
SwissprotQ9SNB80.0SCL30_ARATH; Scarecrow-like protein 30
TrEMBLR0HF420.0R0HF42_9BRAS; Uncharacterized protein
STRINGCagra.0448s0009.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]