PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0342s0004.2.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family AP2
Protein Properties Length: 195aa    MW: 22372 Da    PI: 7.044
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0342s0004.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-17656156
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g+
  Cagra.0342s0004.2.p  6 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRGA 56
                         78*******************......55*************************985 PP
2AP245.32.2e-1498148155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+ +k  grW++++  +     + k+++lg f+t+ eAa+a+++a+ k +g
  Cagra.0342s0004.2.p  98 SKYRGVTLHK-CGRWESRLGQF----LNkKYVYLGLFDTEIEAARAYDKAAIKCNG 148
                          89********.7****995553....234**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.23E-12664No hitNo description
SuperFamilySSF541711.05E-16664IPR016177DNA-binding domain
PfamPF008478.6E-10655IPR001471AP2/ERF domain
PROSITE profilePS5103217.912763IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-18763IPR001471AP2/ERF domain
SMARTSM003804.5E-31769IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-1798157IPR016177DNA-binding domain
CDDcd000181.81E-2498156No hitNo description
PfamPF008471.5E-998148IPR001471AP2/ERF domain
PROSITE profilePS5103215.48899156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-1799156IPR001471AP2/ERF domain
SMARTSM003805.7E-3199162IPR001471AP2/ERF domain
PRINTSPR003672.0E-6100111IPR001471AP2/ERF domain
PRINTSPR003672.0E-6138158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGADADI  60
NFDIEDYMDD LKQMGNLTKE EFMHVLRRQS TGFPRGSSKY RGVTLHKCGR WESRLGQFLN  120
KKYVYLGLFD TEIEAARAYD KAAIKCNGKD AVTNFDPKVY EEEDLIPEMK WNGHNLDLSL  180
GESNLEELGF KSDD*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0342s0004.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1761450.0AK176145.1 Arabidopsis thaliana mRNA for floral homeotic protein apetala2-like, complete cds, clone: RAFL22-96-G17.
GenBankAY0882380.0AY088238.1 Arabidopsis thaliana clone 4623 mRNA, complete sequence.
GenBankBT0292060.0BT029206.1 Arabidopsis thaliana At5g67180 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280704.11e-143AP2-like ethylene-responsive transcription factor TOE3 isoform X1
RefseqXP_023632954.11e-144AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotQ9FH951e-115TOE3_ARATH; AP2-like ethylene-responsive transcription factor TOE3
TrEMBLR0EWM51e-142R0EWM5_9BRAS; Uncharacterized protein
STRINGCagra.0342s0004.1.p1e-143(Capsella grandiflora)
STRINGXP_006280704.11e-143(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.11e-107target of early activation tagged (EAT) 3
Publications ? help Back to Top
  1. Zumajo-Cardona C,Pabón-Mora N
    Evolution of the APETALA2 Gene Lineage in Seed Plants.
    Mol. Biol. Evol., 2016. 33(7): p. 1818-32
    [PMID:27030733]