PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0334s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 404aa    MW: 45696.3 Da    PI: 5.915
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0334s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.51.7e-29610632128
                  NAM  32 evikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkge 117
                          e+i e++i+++eP  Lp  +k+++++  wyfFs+++ ++ ++k  +r+t+sgyWkatg d+++++k  ++ ++g+kktLv+y+gr p+g+
  Cagra.0334s0001.1.p   6 EAIGEINICNYEPFYLPslSKIQSDDLVWYFFSPKEYTSVKKKVIKRTTSSGYWKATGVDRKIKDKrgNRGEIGIKKTLVYYEGRVPNGV 95 
                          6799*************5448888888**************************************9666667****************** PP

                  NAM 118 ktdWvmheyrl 128
                           t Wvmhey++
  Cagra.0334s0001.1.p  96 WTPWVMHEYHI 106
                          *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100535.3321124IPR003441NAC domain
SuperFamilySSF1019411.1E-324124IPR003441NAC domain
PfamPF023651.5E-1322106IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
NWLVDEAIGE INICNYEPFY LPSLSKIQSD DLVWYFFSPK EYTSVKKKVI KRTTSSGYWK  60
ATGVDRKIKD KRGNRGEIGI KKTLVYYEGR VPNGVWTPWV MHEYHITCLP PDQRNYVICQ  120
VMYKGEDGDI PTGGNYSSEP SQSFVSDSNT VRATINTEPK FEQRGQENIF GMSVDDLKGP  180
MNRQEDHSLW DVLDPDMFFS DNNNPTLLPQ APHLAPNDDE FLSGLRHVDR EQVAYLFANE  240
EFISRPTTSM QENRNDHRPK RPLSGIIHEY SCDTDSDAES ISATSYQGTS SPGDSVGSSN  300
RRSQTGLDEI ISLSKDIQTS DEPSISNKTI PSKMKQDSSR AAYAPIHKES SSMVKPEKVW  360
FITEKAMEVN RKKSPRSIYF MRMVIGFILL LAVIGNIISV LLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-18612447165NO APICAL MERISTEM PROTEIN
1ut4_B2e-18612447165NO APICAL MERISTEM PROTEIN
1ut7_A2e-18612447165NO APICAL MERISTEM PROTEIN
1ut7_B2e-18612447165NO APICAL MERISTEM PROTEIN
3swm_A3e-18612450168NAC domain-containing protein 19
3swm_B3e-18612450168NAC domain-containing protein 19
3swm_C3e-18612450168NAC domain-containing protein 19
3swm_D3e-18612450168NAC domain-containing protein 19
3swp_A3e-18612450168NAC domain-containing protein 19
3swp_B3e-18612450168NAC domain-containing protein 19
3swp_C3e-18612450168NAC domain-containing protein 19
3swp_D3e-18612450168NAC domain-containing protein 19
4dul_A2e-18612447165NAC domain-containing protein 19
4dul_B2e-18612447165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00426DAPTransfer from AT4G01550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0334s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023637654.10.0NAC domain-containing protein 69
SwissprotQ9M1260.0NAC69_ARATH; NAC domain-containing protein 69
TrEMBLR0GRZ70.0R0GRZ7_9BRAS; Uncharacterized protein
STRINGCagra.0334s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.10.0NAC domain containing protein 69
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]