PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0301s0088.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 459aa    MW: 50401.3 Da    PI: 7.1856
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0301s0088.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.24.2e-114570126
                         --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                         ++++ C+ff+rtG+C yG++C+++H+
  Cagra.0301s0088.1.p 45 PGERDCQFFLRTGQCGYGNTCRYNHP 70
                         5789*********************9 PP
2zf-CCCH35.71.4e-1191115327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C +f++tG CkyG++Ck++H++
  Cagra.0301s0088.1.p  91 QPDCEYFLKTGACKYGPTCKYHHPK 115
                          789********************96 PP
3zf-CCCH32.71.3e-10136159326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          ++ C+++++tG C++G  CkF+H+
  Cagra.0301s0088.1.p 136 EKSCPYYMQTGLCRFGVACKFHHP 159
                          667********************8 PP
4zf-CCCH40.25.6e-13265290227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           +++Crff+ tGtCkyGd Ck++H++
  Cagra.0301s0088.1.p 265 ERAECRFFMNTGTCKYGDDCKYSHPK 290
                          689*********************96 PP
5zf-CCCH30.56.1e-10309335127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++ C +f ++G+Ck+G++Ck+ H++
  Cagra.0301s0088.1.p 309 PGEPACGNFKAYGFCKFGATCKYDHSM 335
                          57899********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4554472IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-64471IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-84670IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-54872IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-45069IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.10388116IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-688115IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-991115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-692116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-494114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61133161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6133161IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-5133160IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-8135159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4138158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-7260292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.718263291IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7264290IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10265290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-7269291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5305334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.131308336IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-5308335IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-7310334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MSETQQQVQN STGSIRSPEK IEDSFRRMKV NEDNLEQVSP YPDRPGERDC QFFLRTGQCG  60
YGNTCRYNHP LTHLPQGAIY YKDQLPERVG QPDCEYFLKT GACKYGPTCK YHHPKDRNGA  120
GPVLFNVLGF PMRQGEKSCP YYMQTGLCRF GVACKFHHPH PQAPNGHSAY GMSSFPSVGF  180
PYGSGMTMMS LPPATYGAMP RPQVPQSQAY MPFMVAPSQG LLPPQGWATY MAASNPIYNV  240
KTQPDSSSSA SVPVAVTSHH HSFPERAECR FFMNTGTCKY GDDCKYSHPK ERLLQSPNLL  300
NHIVLPVRPG EPACGNFKAY GFCKFGATCK YDHSMPLNPY NNTGMAMSSL PTPYPYAPPI  360
STHLRISSPP SPSDSTTLAN GKPAPESQSS ETEKQDDTAT QPEKSEVHDP LPASRSDSTT  420
LPNGKPDAED PSSETEKQDD KPAQPDSSKV QESSVIST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0301s0088.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1387440.0AF138744.1 Arabidopsis thaliana zinc finger protein 2 (zfn2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294179.10.0zinc finger CCCH domain-containing protein 26
SwissprotO487720.0C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLR0FVV60.0R0FVV6_9BRAS; Uncharacterized protein
STRINGCagra.0301s0088.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.10.0zinc finger nuclease 2