PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0301s0034.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 271aa    MW: 31058.2 Da    PI: 9.1832
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0301s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1631.1e-50151371128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelvv+yL++kv+g +l++ +vi+e+d++k++PwdLp      ++e yfFs+++ ky++g+r+nr+t sgyWkatg dk
  Cagra.0301s0034.1.p  15 LPPGFRFHPTDEELVVQYLRRKVTGLPLPA-SVIPETDVCKSDPWDLPGD---CDSERYFFSTKEAKYPNGNRSNRSTGSGYWKATGIDK 100
                          79****************************.99***************44...47899******************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++ + k+ +vg+kktLvfykg+ p+g++t+Wv+heyrl
  Cagra.0301s0034.1.p 101 QIGK-KKLVVGMKKTLVFYKGKPPNGTRTNWVLHEYRL 137
                          **99.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-6010158IPR003441NAC domain
PROSITE profilePS5100556.6515158IPR003441NAC domain
PfamPF023655.1E-2716137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEKRSSIKNR GVLRLPPGFR FHPTDEELVV QYLRRKVTGL PLPASVIPET DVCKSDPWDL  60
PGDCDSERYF FSTKEAKYPN GNRSNRSTGS GYWKATGIDK QIGKKKLVVG MKKTLVFYKG  120
KPPNGTRTNW VLHEYRLVDS QQDSSYNMNW VLCRVFLKKR SNSSNKRKEE EERDELENEK  180
ETEIEEKKSR STTCPIFYDF MRKADKKKRR RRCCDLNLAP AASSCCCCFC SSSGSSSSVC  240
SSALTQTSSN DTHNYHDEIT CRENKFCLFL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-531316115168NO APICAL MERISTEM PROTEIN
1ut4_B5e-531316115168NO APICAL MERISTEM PROTEIN
1ut7_A5e-531316115168NO APICAL MERISTEM PROTEIN
1ut7_B5e-531316115168NO APICAL MERISTEM PROTEIN
3swm_A6e-531316118171NAC domain-containing protein 19
3swm_B6e-531316118171NAC domain-containing protein 19
3swm_C6e-531316118171NAC domain-containing protein 19
3swm_D6e-531316118171NAC domain-containing protein 19
3swp_A6e-531316118171NAC domain-containing protein 19
3swp_B6e-531316118171NAC domain-containing protein 19
3swp_C6e-531316118171NAC domain-containing protein 19
3swp_D6e-531316118171NAC domain-containing protein 19
4dul_A5e-531316115168NAC domain-containing protein 19
4dul_B5e-531316115168NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205210KKKRRR
2205211KKKRRRR
3206211KKRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0301s0034.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294782.11e-148NAC domain-containing protein 41
SwissprotO227981e-130NAC41_ARATH; NAC domain-containing protein 41
TrEMBLR0HQU61e-147R0HQU6_9BRAS; Uncharacterized protein
STRINGCagra.0301s0034.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.21e-125NAC domain containing protein 41
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]