 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cagra.0288s0001.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 496aa MW: 56326.4 Da PI: 6.948 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.0288s0001.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 66.7 | 3e-21 | 141 | 196 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
r+k +++t++q++ +e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k
Cagra.0288s0001.1.p 141 RKKYHRHTTDQIRHMEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 196
7999************************************************9877 PP
|
| 2 | START | 193.1 | 1.3e-60 | 298 | 495 | 1 | 176 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS
START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla... 77
e+a++a+ el+k+a+++ep+W +s+ e++n+de+l++f+++++ +++ea+r++g+v+m++++l ++++d++ qW+e++a
Cagra.0288s0001.1.p 298 EVANRATLELQKMATSAEPLWLRSVetgrEILNYDEYLKEFPQAQAssfpgrKTIEASRDVGIVFMDAHKLAQSFMDVG-QWKEMFAcli 386
68899**************************************999*********************************.********** PP
.EEEEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEE CS
START 78 .kaetlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepk 157
ka+t++vi++g ga+qlm+ e+q+l+p+vp R+++fvR++rql+ ++w++vdvSv++e++++e ++s+ ++++lpSg++ie++
Cagra.0288s0001.1.p 387 sKAATVDVIRQGegpsridGAIQLMFGEMQLLTPVVPtREVYFVRSCRQLSPEKWAVVDVSVSVEDNNTEkEASLLKCRKLPSGCIIEDT 476
****************************************************************************************** PP
CTCEEEEEEEE-EE--SSX CS
START 158 snghskvtwvehvdlkgrl 176
snghskvtwveh d+++++
Cagra.0288s0001.1.p 477 SNGHSKVTWVEHLDVSAST 495
***************9876 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009957 | Biological Process | epidermal cell fate specification |
| GO:0010062 | Biological Process | negative regulation of trichoblast fate specification |
| GO:0005634 | Cellular Component | nucleus |
| GO:0008289 | Molecular Function | lipid binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 496 aa
Download sequence Send
to blast |
LHYINVWDKN EIKDLNKGKR ERRDIYIKGR RSGERKAKKG FGFCMSMAVE MSSKQQPTKD 60
FFSSPALSLS LAGIFRNASS GSTNPEEDFL SRKVVDDEDR TVEMSSENSG PTRSRSEEDL 120
DGEDHEEDEE EDGSKGNKRK RKKYHRHTTD QIRHMEALFK ETPHPDEKQR QQLSKQLGLA 180
PRQVKFWFQN RRTQIKAIQE RHENSLLKAE LEKLREENKA MRESFSKANS SCPNCGGGPD 240
DLHLENSKLK AELDKLRAAL GRTPYPLQAS CSEDQEHRLG SLDFYTGVFA LEKSRIAEVA 300
NRATLELQKM ATSAEPLWLR SVETGREILN YDEYLKEFPQ AQASSFPGRK TIEASRDVGI 360
VFMDAHKLAQ SFMDVGQWKE MFACLISKAA TVDVIRQGEG PSRIDGAIQL MFGEMQLLTP 420
VVPTREVYFV RSCRQLSPEK WAVVDVSVSV EDNNTEKEAS LLKCRKLPSG CIIEDTSNGH 480
SKVTWVEHLD VSASTV
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AF360294 | 0.0 | AF360294.1 Arabidopsis thaliana putative homeobox protein GLABRA2 (At1g79840) mRNA, complete cds. |
