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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0277s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 203aa MW: 23221 Da PI: 10.0514 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.1 | 1.1e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien + rqvtfskRr g++KKA+ELSvLCda+va iifs++g+lye++s Cagra.0277s0030.1.p 9 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIIFSQKGRLYEFAS 59 68***********************************************86 PP | |||||||
2 | K-box | 59.4 | 1.6e-20 | 85 | 168 | 11 | 94 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 e+ + l++e+ + k+ie L+ +R+l+G++L +s+keLq + +q+eksl +Rs+K +l+ +++++l+ ke el++e +L Cagra.0277s0030.1.p 85 EQYVQGLKKEMVAMVKKIEVLEVHNRKLMGQSLAFCSVKELQDIANQIEKSLHIVRSTKAKLYEDELKKLKPKEGELKDERVRL 168 56678999**************999*****************************************************998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.7E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.637 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-31 | 3 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.13E-39 | 3 | 73 | No hit | No description |
PRINTS | PR00404 | 1.5E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.2E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.254 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.6E-20 | 89 | 171 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAIIFSQ KGRLYEFASS 60 DIKKTIKRYS EYKREYFGAE SHPIEQYVQG LKKEMVAMVK KIEVLEVHNR KLMGQSLAFC 120 SVKELQDIAN QIEKSLHIVR STKAKLYEDE LKKLKPKEGE LKDERVRLCG RVGEMSMGMP 180 SESKEKEDVE TDLSIGFSKS RP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-20 | 1 | 93 | 1 | 90 | MEF2C |
5f28_B | 1e-20 | 1 | 93 | 1 | 90 | MEF2C |
5f28_C | 1e-20 | 1 | 93 | 1 | 90 | MEF2C |
5f28_D | 1e-20 | 1 | 93 | 1 | 90 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0277s0030.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ447061 | 0.0 | DQ447061.1 Arabidopsis thaliana clone pENTR221-At5g51860 MADS-box protein (At5g51860) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023644519.1 | 1e-141 | MADS-box protein AGL72 | ||||
Swissprot | Q9FLH5 | 1e-118 | AGL72_ARATH; MADS-box protein AGL72 | ||||
TrEMBL | R0GNE9 | 1e-139 | R0GNE9_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.0277s0030.1.p | 1e-144 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51860.2 | 1e-109 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0277s0030.1.p |
Publications ? help Back to Top | |||
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