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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.0277s0030.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
MIKC_MADS |
Protein Properties |
Length: 203aa MW: 23221 Da PI: 10.0514 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.0277s0030.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 90.1 | 1.1e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien + rqvtfskRr g++KKA+ELSvLCda+va iifs++g+lye++s
Cagra.0277s0030.1.p 9 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIIFSQKGRLYEFAS 59
68***********************************************86 PP
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2 | K-box | 59.4 | 1.6e-20 | 85 | 168 | 11 | 94 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94
e+ + l++e+ + k+ie L+ +R+l+G++L +s+keLq + +q+eksl +Rs+K +l+ +++++l+ ke el++e +L
Cagra.0277s0030.1.p 85 EQYVQGLKKEMVAMVKKIEVLEVHNRKLMGQSLAFCSVKELQDIANQIEKSLHIVRSTKAKLYEDELKKLKPKEGELKDERVRL 168
56678999**************999*****************************************************998877 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009909 | Biological Process | regulation of flower development |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 203 aa
Download sequence Send
to blast |
MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAIIFSQ KGRLYEFASS 60 DIKKTIKRYS EYKREYFGAE SHPIEQYVQG LKKEMVAMVK KIEVLEVHNR KLMGQSLAFC 120 SVKELQDIAN QIEKSLHIVR STKAKLYEDE LKKLKPKEGE LKDERVRLCG RVGEMSMGMP 180 SESKEKEDVE TDLSIGFSKS RP*
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Functional Description ? help
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Source |
Description |
UniProt | MADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | DQ447061 | 0.0 | DQ447061.1 Arabidopsis thaliana clone pENTR221-At5g51860 MADS-box protein (At5g51860) mRNA, complete cds. |