PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0277s0022.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 202aa MW: 22715.1 Da PI: 10.1116 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.7 | 2e-08 | 30 | 81 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ f+ Lr++lP ++K ++ + Av +Ik+ q Cagra.0277s0022.1.p 30 KLLHRNIERQRRQEMAILFASLRSHLPLkY---IKGKRAMSDHVNGAVAFIKDTQ 81 567999**********************77...9999999***********9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.6E-12 | 25 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.69E-8 | 26 | 85 | No hit | No description |
PROSITE profile | PS50888 | 11.109 | 28 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-7 | 30 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.3E-6 | 30 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MDPCNNPKKT RHQIRHIPHV GDETTKKEKK LLHRNIERQR RQEMAILFAS LRSHLPLKYI 60 KGKRAMSDHV NGAVAFIKDT QTRIQELSAR RDELKREISD HTSQTRSGSG SSRSEPASVM 120 VQPCVSGFEV VVSSSASGLA LSRVLEVLHE QGLPVISSLT ARVNERLMYT IQVEVNSFGC 180 CDLAWLQQKL IEELVLPTTR H* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0277s0022.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493789 | 1e-180 | AB493789.1 Arabidopsis thaliana At5g51790 mRNA for hypothetical protein, partial cds, clone: RAAt5g51790. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006281128.1 | 1e-134 | transcription factor bHLH120 isoform X1 | ||||
Swissprot | Q9FLI0 | 1e-110 | BH120_ARATH; Transcription factor bHLH120 | ||||
TrEMBL | R0EYP6 | 1e-133 | R0EYP6_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0277s0022.1.p | 1e-147 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2968 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 1e-98 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0277s0022.1.p |
Publications ? help Back to Top | |||
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