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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0277s0021.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 199aa MW: 23103.7 Da PI: 9.3647 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.4 | 6.1e-14 | 28 | 79 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++h e Er RR+++ + ++ Lr+llP + ++K s ++ + +Av+YIk+Lq Cagra.0277s0021.1.p 28 KMMHRETERLRRQEMATLYASLRSLLPLHF--IKGKRSTSDQVNEAVNYIKYLQ 79 789*************************65..*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.941 | 26 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.89E-8 | 28 | 83 | No hit | No description |
Pfam | PF00010 | 6.1E-11 | 28 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.2E-10 | 28 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-14 | 28 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.8E-6 | 32 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MDDCREKRRR RCPKLTCSTD HNNNNMEKMM HRETERLRRQ EMATLYASLR SLLPLHFIKG 60 KRSTSDQVNE AVNYIKYLQR KTKELSLRRD ELMLLSRGSF LGCSSNDDSK EEMEMMSRKN 120 HVVVRQCLVG VEIVFSSRRC RGQPRFSSVL QVLSENGLCL LNSISSIVDD RLIYTIQAEV 180 NDMALIDLVA LENRLVRM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0277s0021.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK317430 | 1e-179 | AK317430.1 Arabidopsis thaliana AT5G51780 mRNA, complete cds, clone: RAFL24-28-D24. | |||
GenBank | BT010952 | 1e-179 | BT010952.1 Arabidopsis thaliana At5g51780 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006281135.1 | 1e-139 | transcription factor bHLH36 | ||||
Swissprot | Q9FLI1 | 1e-100 | BH036_ARATH; Transcription factor bHLH36 | ||||
TrEMBL | R0GSA5 | 1e-138 | R0GSA5_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0277s0021.1.p | 1e-142 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4479 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 1e-102 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0277s0021.1.p |