PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 258aa MW: 29707.4 Da PI: 4.4417

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0268s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.5	1.7e-11	57	99	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr+++P+ +Kl+Ka++ + ++Y+++L Cagra.0268s0010.1.p 57 VSERNRRQKLNQRLFALRSVVPNI-----TKLDKASVIKDSIDYMQEL 99 57*******************7.....7*************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.044	50	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.40E-10	53	99	No hit	No description
SuperFamily	SSF47459	2.75E-16	54	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.6E-16	56	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.6E-13	56	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-9	57	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MEDLEHEYKN YWETTMFFQN QELEFDSWPM EEAFSGSGES SSPDGAATSP ASSKNVVSER 60 NRRQKLNQRL FALRSVVPNI TKLDKASVIK DSIDYMQELI EQEKRLEAEI RELESRSTLL 120 ENPIKDYDCV NNFSENPLQD DFSDNIFMRS KKVKQTDYNT RVQYSPIEVL EMKVTWMGEK 180 TVVVCITCSK KRETMLQLCK VLESLNLNVL TTNFSSFSSR LSTTLFLQAD EEESNAVEAK 240 IQMAIAAYND PNYLINF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0268s0010.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117730	0.0	AK117730.1 Arabidopsis thaliana At4g29930 mRNA for putative bHLH transcription factor (bHLH027), complete cds, clone: RAFL17-41-A21.
GenBank	AK176201	0.0	AK176201.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL23-07-N06.
GenBank	AK176276	0.0	AK176276.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL23-19-M11.
GenBank	AK228201	0.0	AK228201.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL14-65-D05.
GenBank	BT005869	0.0	BT005869.1 Arabidopsis thaliana At4g29930 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006285089.1	0.0	transcription factor bHLH27
Swissprot	Q700E3	1e-149	BH027_ARATH; Transcription factor bHLH27
TrEMBL	R0F7Y5	0.0	R0F7Y5_9BRAS; Uncharacterized protein
STRING	Cagra.0268s0010.1.p	0.0	(Capsella grandiflora)
STRING	XP_006285089.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12841	18	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29930.1	1e-140	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cagra.0268s0010.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]