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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0263s0009.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 122aa MW: 13385.3 Da PI: 7.1303 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 28.1 | 4.7e-09 | 17 | 58 | 17 | 59 |
ZF-HD_dimer 17 lGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + g+ D C+ f++ geegt++a+ C CgCH FH ++v + Cagra.0263s0009.1.p 17 INGEPKDHCRHFLAG-GEEGTPEAFFCHGCGCHVCFHLKDVIK 58 667889********8.999******************998765 PP | |||||||
2 | ZF-HD_dimer | 76.7 | 3.1e-24 | 67 | 119 | 4 | 56 |
ZF-HD_dimer 4 vrYkeClkNhAaslGgh.avDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 ++Y +ClkNh a +Gg ++DGCgEfm++ gee t++al CaACgCHR+FH ++ Cagra.0263s0009.1.p 67 AQYGKCLKNHTAYMGGRcSLDGCGEFMAA-GEERTPEALSCAACGCHRSFHQKS 119 68**************7369********9.8999*****************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 8.3E-8 | 18 | 55 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 5.0E-12 | 68 | 118 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.1E-22 | 68 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.8E-22 | 68 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 20.635 | 69 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MSKWREIVTY GMCVNRINGE PKDHCRHFLA GGEEGTPEAF FCHGCGCHVC FHLKDVIKEI 60 DMSTAIAQYG KCLKNHTAYM GGRCSLDGCG EFMAAGEERT PEALSCAACG CHRSFHQKSY 120 L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0263s0009.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010420655.1 | 1e-75 | PREDICTED: zinc-finger homeodomain protein 8-like | ||||
TrEMBL | A0A1J3IS13 | 4e-55 | A0A1J3IS13_NOCCA; Mini zinc finger protein 1 | ||||
STRING | Cagra.0263s0009.1.p | 9e-86 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17489 | 7 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 2e-17 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0263s0009.1.p |