PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cagra.0255s0018.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

C2H2

Protein Properties

Length: 229aa MW: 25266.2 Da PI: 7.9637

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0255s0018.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k Fs++ L H++ H Cagra.0255s0018.1.p 83 FACTFCKKEFSTSQALGGHQNAH 105 78******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.4E-5	79	109	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.65E-6	80	110	No hit	No description
Pfam	PF13912	5.8E-6	82	107	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.655	83	110	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MELNLSTPTS CSSSSISSSS HHEIIPSTTK GRKMKEKVSA AEPSMETTPR LEFRFLFDES 60 IRNSGFGDEA QAGTRAEPKA RVFACTFCKK EFSTSQALGG HQNAHKQERS LAKRRKEIEV 120 NYPGLSSFYS NQYPPPSGVS YNGSSSQYDL GVRYNPNIAK TSKPYPFNIF RCRLGYRGLN 180 IPLLSHLSVP KSDDLSTNLI ANLEGSINED IKDDQPDTDS DIDLSLKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0255s0018.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL162351	1e-108	AL162351.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T20L15 (ESSA project).
GenBank	CP002688	1e-108	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006279345.1	1e-166	zinc finger protein 4
TrEMBL	R0GM17	1e-165	R0GM17_9BRAS; Uncharacterized protein
STRING	Cagra.0255s0018.1.p	1e-168	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8738	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	2e-86	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Cagra.0255s0018.1.p