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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cagra.0248s0135.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
NAC |
| Protein Properties |
Length: 188aa MW: 21505.8 Da PI: 4.5915 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.0248s0135.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 108.7 | 6.8e-34 | 3 | 118 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
lppGfrF Ptdeelvv++L++k + +++ +vi+++d+y ++PwdLp k+ +e ++wyf+s++ + r+t++gyW + g d+
Cagra.0248s0135.1.p 3 LPPGFRFFPTDEELVVHFLHRKSSLLPCHP-DVIPDLDLYPYDPWDLPGKALGEGRQWYFYSRKT--------QDRVTSNGYWGSMGMDE 83
79*************************999.99***************87778899*****9974........5799************* PP
NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+v+++ ++++vg+kk L+fy g++ +t+W+m+ey+l
Cagra.0248s0135.1.p 84 PVYTSsTHKKVGIKKYLTFYLGDS----QTNWIMQEYSL 118
***9877888**********7654....68*******97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010089 | Biological Process | xylem development |
| GO:0043067 | Biological Process | regulation of programmed cell death |
| GO:0048367 | Biological Process | shoot system development |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 188 aa
Download sequence Send
to blast |
MNLPPGFRFF PTDEELVVHF LHRKSSLLPC HPDVIPDLDL YPYDPWDLPG KALGEGRQWY 60
FYSRKTQDRV TSNGYWGSMG MDEPVYTSST HKKVGIKKYL TFYLGDSQTN WIMQEYSLPD 120
SSSSSRSSKR SSRASSSSSH KPDYSKWVIC RVYEQNCSEE EDDDGTELSC LDEVFLSLDD 180
LDEVSLP*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-36 | 1 | 161 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-36 | 1 | 161 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-36 | 1 | 161 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-36 | 1 | 161 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 4e-36 | 1 | 161 | 18 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 4e-36 | 1 | 161 | 18 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 4e-36 | 1 | 161 | 18 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 4e-36 | 1 | 161 | 18 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 4e-36 | 1 | 161 | 18 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 4e-36 | 1 | 161 | 18 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 4e-36 | 1 | 161 | 18 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 4e-36 | 1 | 161 | 18 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 4e-36 | 1 | 161 | 15 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 4e-36 | 1 | 161 | 15 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK118783 | 0.0 | AK118783.1 Arabidopsis thaliana At5g64530 mRNA for unknown protein, complete cds, clone: RAFL21-11-N14. |
| GenBank | BT025746 | 0.0 | BT025746.1 Arabidopsis thaliana At5g64530 mRNA, complete cds. |
