PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0239s0063.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 340aa    MW: 39002.8 Da    PI: 5.1173
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0239s0063.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027426123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ykC  C ksF +   L  H+r+H
  Cagra.0239s0063.1.p  4 YKCRFCFKSFINGKALGGHMRSH 26
                         9*********************9 PP
2zf-C2H214.69.3e-05209231123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC  Cgk+F++   L  H  +H
  Cagra.0239s0063.1.p 209 FKCDTCGKVFKSYQALGGHRASH 231
                          89***********9999998887 PP
3zf-C2H211.90.0007259281123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C ++F++   L  H r+H
  Cagra.0239s0063.1.p 259 HECPICFRVFTSGQALGGHKRSH 281
                          79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.07E-9326No hitNo description
PfamPF139128.2E-5327IPR007087Zinc finger, C2H2
SMARTSM003550.035426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576673.07E-9204231No hitNo description
PfamPF139121.2E-12208233IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.593209236IPR007087Zinc finger, C2H2
SMARTSM003550.015209231IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280211231IPR007087Zinc finger, C2H2
PfamPF139129.1E-11258281IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182259281IPR007087Zinc finger, C2H2
SMARTSM003550.15259281IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280261281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MERYKCRFCF KSFINGKALG GHMRSHMLTL SAKPQLYEST REQEEEEEEE ERRTSQLSDD  60
GTESDASSSY DGFDHLKRNR TQMVDDDGLD FDFAEDDDVE SETESSRINP TRRRSKRTRK  120
LGSFDFDYKE LKTSQPGELA TEPEHHSSAS DTTTEQDLAF CLIMLSRDKW KQHKKKTKQS  180
VEEEEEYETD HECGEDYKSS KNRGGRGRFK CDTCGKVFKS YQALGGHRAS HKKNKACTTK  240
TEQVKTEYVH GVTEKKKAHE CPICFRVFTS GQALGGHKRS HGSSIGAGRL SVNQIVLINQ  300
QEEEEEEEEE EVSMKQRMID LNLPAPNEED ETSLVFDEW*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0239s0063.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546050.0AC254605.1 Capsella rubella clone CAP23-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294533.10.0zinc finger protein ZAT4
SwissprotQ9SHD01e-145ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLR0FXI70.0R0FXI7_9BRAS; Uncharacterized protein
STRINGCagra.0239s0063.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-122C2H2-like zinc finger protein