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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cagra.0210s0004.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
C2H2 |
| Protein Properties |
Length: 383aa MW: 43053.8 Da PI: 6.6962 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.0210s0004.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16 | 3.4e-05 | 216 | 235 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++Cp C k+F+r n++ H+
Cagra.0210s0004.1.p 216 FSCPVCFKTFNRYNNMQMHM 235
89*****************9 PP
|
| 2 | zf-C2H2 | 14.4 | 0.00011 | 300 | 322 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C +Cgk F + + ++H +++
Cagra.0210s0004.1.p 300 FMCRKCGKAFAVRGDWRTHEKNC 322
89*****************9987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 383 aa
Download sequence Send
to blast |
MTDPYSNFFT DWFKSNPFHH YPSSSSNPSP SNLPPPSLPT PSSFFFFPQS GDLRRPPPLP 60
TPPPSPPLRE ALPLLSLSPA NKQQDHHHSH DHLNQEPPST SMDVDYDHQD DHNLDDDDHD 120
VTVALHIGLP SPSAQEMASL LMMSSSSSSS RTTLHHEDLN HKKDLDHDYS HGAAEGGEDD 180
DEDLVGGDGG CRISRLNKGQ YWIPTPSQIL IGPTQFSCPV CFKTFNRYNN MQMHMWGHGS 240
QYRKGPESLR GTQPTGMLRL PCYCCAPGCR NNIDHPRAKP LKDFRTLQTH YKRKHGIKPF 300
MCRKCGKAFA VRGDWRTHEK NCGKLWYCIC GSDFKHKRSL KDHIKAFGNG HGAYGIDGFD 360
EEDEPASEVE QLDNDHESMQ SK*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF254447 | 0.0 | AF254447.1 Arabidopsis thaliana WIP2 protein (WIP2) mRNA, complete cds. |
| GenBank | BT021089 | 0.0 | BT021089.1 Arabidopsis thaliana At3g57670 gene, complete cds. |
