PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0147s0052.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

HD-ZIP

Protein Properties

Length: 206aa MW: 23298.1 Da PI: 7.9115

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0147s0052.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.1	3.4e-19	66	121	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rrk+ ++tkeq + Lee F +n++++ +++++LA+ l+L++rqV vWFqNrRa+ k Cagra.0147s0052.1.p 66 RRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSK 121 79999*************************************************98 PP
2	HD-ZIP_I/II	111	8e-36	67	155	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq++lLEesF ++++L+p++K++la+ L+l++rqv+vWFqnrRAR k+k++E+++e+Lkr++ +lke+n+rLekeveeLr + Cagra.0147s0052.1.p 67 RKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLEKEVEELR-A 155 69*************************************************************************************9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-19	45	121	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.67E-19	54	122	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.929	63	123	IPR001356	Homeobox domain
SMART	SM00389	1.2E-17	65	127	IPR001356	Homeobox domain
CDD	cd00086	6.26E-16	66	124	No hit	No description
Pfam	PF00046	1.8E-16	66	121	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	98	121	IPR017970	Homeobox, conserved site
Pfam	PF02183	4.8E-9	123	157	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.8E-16	123	166	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MDISPNSSSL ELTISIPSFS PSPSSPGDYH GMRDFDINQT PKMEEDHMIG ATQHANEEDS 60 NSGGKRRKKL RLTKEQSHLL EESFIQNHTL TPKQKKDLAT FLKLSQRQVE VWFQNRRARS 120 KLKHTEMECE YLKRWFGSLK EQNRRLEKEV EELRALKPSS TSSLTMCPRC ECVTSAADNE 180 SNAVQEGADV SSRSRMTISS SSSLC*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00226	DAP	Transfer from AT1G70920	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0147s0052.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK175837	0.0	AK175837.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-44-P21.
GenBank	AK175965	0.0	AK175965.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-65-O17.
GenBank	EU339186	0.0	EU339186.1 Arabidopsis thaliana HD-ZIP transcription factor 18 (ATHB18) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023643546.1	1e-124	homeobox-leucine zipper protein ATHB-X isoform X1
Swissprot	Q8GXM7	1e-111	ATHBX_ARATH; Homeobox-leucine zipper protein ATHB-X
TrEMBL	R0GCY0	1e-112	R0GCY0_9BRAS; Uncharacterized protein
STRING	Cagra.0147s0052.1.p	1e-151	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13380	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G70920.1	1e-103	homeobox-leucine zipper protein 18

Link Out ? help Back to Top
Phytozome	Cagra.0147s0052.1.p

Publications ? help Back to Top
Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439]