PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0147s0032.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 141aa    MW: 16002.2 Da    PI: 10.9729
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0147s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.2e-2075127155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr+++ +g+WvAeIr+     + +r r +lg+f taeeAa a+++a+ +l g
  Cagra.0147s0032.1.p  75 KKFRGVRQRP-WGKWVAEIRCaR---KgRRDRLWLGTFNTAEEAALAYDNAAVQLIG 127
                          59********.**********55...3347**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381236.9E-371137IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000187.79E-2575134No hitNo description
PfamPF008475.7E-1476127IPR001471AP2/ERF domain
SMARTSM003809.1E-2976139IPR001471AP2/ERF domain
PROSITE profilePS5103221.10176135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-2876135IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2076135IPR016177DNA-binding domain
PRINTSPR003673.8E-117788IPR001471AP2/ERF domain
PRINTSPR003673.8E-11101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MKRIIRISFT DAEATDSSSD EDEETQKRSS QTTRRRGKRL VKEIVIDPSD TLDVCKTRFK  60
IRIPAEFLTA AKERKKFRGV RQRPWGKWVA EIRCARKGRR DRLWLGTFNT AEEAALAYDN  120
AAVQLIGPHA PTNFGSPPRG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17731341171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0147s0032.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300566.14e-83ethylene-responsive transcription factor ERF070
SwissprotQ9C9951e-78ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLR0HUE78e-82R0HUE7_9BRAS; Uncharacterized protein
STRINGCagra.0147s0032.1.p4e-98(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.12e-50ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]