PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0133s0112.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CO-like
Protein Properties Length: 375aa    MW: 40837.3 Da    PI: 6.4044
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0133s0112.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.21.2e-06444539
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                         +C+ ++e++   +C+++  +lC +C  + H+       H++
  Cagra.0133s0112.1.p  4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSAnalskrHSR 44
                         6*****************************65677777776 PP
2zf-B_box21.84e-074695437
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg................H 37
                          +C++++ ++++  C + +  lC++C  ++H++                H
  Cagra.0133s0112.1.p 46 LICERCNAQPASVRCVEERLSLCQNCDWSGHNSsnnnssstsssssppqH 95
                         68*****************************7655555555555555555 PP
3CCT60.46.2e-21317360144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R++a++RYkeK+k RkF+K++rY+sRKa+A+ R RvKGrFvk+ 
  Cagra.0133s0112.1.p 317 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAG 360
                          99***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.897147IPR000315B-box-type zinc finger
CDDcd000219.30E-8447No hitNo description
SMARTSM003362.5E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501198.8594387IPR000315B-box-type zinc finger
CDDcd000215.54E-64776No hitNo description
PfamPF062031.0E-15317359IPR010402CCT domain
PROSITE profilePS5101715.338317359IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLICER CNAQPASVRC  60
VEERLSLCQN CDWSGHNSSN NNSSSTSSSS SPPQHKRQTI SCYSGCPSSS ELASIWSFCL  120
DLAGQSICEQ ELGLMNIDDN VPTTDKICIE DKKHVLPGSS SVPETSSAAQ GTSSFAKKDV  180
GVCEDDFYGN LGMDEVDLAL ENYEELFGVA FNPSEELFGH GGIDSLFQKH QTAPEGGNSV  240
QPACSNDSFM SSKTEPIICF ASKPAHSNIS FSGVTGESSA GDFQECGASS SMQLSGEPPW  300
YPPASQDNNA CSHSVTRNNA VMRYKEKKKA RKFDKRVRYA SRKARADVRR RVKGRFVKAG  360
EAYDYDPLTP TRSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0133s0112.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3169340.0AK316934.1 Arabidopsis thaliana AT3G07650 mRNA, complete cds, clone: RAFL14-22-K23.
GenBankBT0294900.0BT029490.1 Arabidopsis thaliana At3g07650 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296715.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_023642594.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE50.0COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLR0HZV40.0R0HZV4_9BRAS; Uncharacterized protein
STRINGCagra.0133s0112.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.40.0CONSTANS-like 9