PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0114s0045.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 164aa    MW: 18669.9 Da    PI: 9.7767
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0114s0045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.64.4e-151150342
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         i ++s r vtf kR+ g+lKK +EL +LC+  ++ ii+s+
  Cagra.0114s0045.1.p 11 ITDNSTRRVTFRKRKDGLLKKIKELTILCGLPACAIIYSE 50
                         789999*********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-17160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.745150IPR002100Transcription factor, MADS-box
CDDcd002669.29E-21285No hitNo description
SuperFamilySSF554552.75E-21294IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-8323IPR002100Transcription factor, MADS-box
PfamPF003199.9E-151150IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MGRRKVTHQL ITDNSTRRVT FRKRKDGLLK KIKELTILCG LPACAIIYSE YKDGPELWPN  60
VNEVRSLLDR LSELPVEKQT KYMMDQKDLM NKMIQDAEKK LEKEKAYTRA MKLGIMASTS  120
DITTDTDCSE ELAKAAEVID KKLKVIQERI KAVEAGAPII KRD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVTHQLITDNSTRRVTFRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0114s0045.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065511e-157AC006551.6 Arabidopsis thaliana chromosome I BAC F12K8 genomic sequence, complete sequence.
GenBankAY1412501e-157AY141250.1 Arabidopsis thaliana MADS-box protein AGL87 mRNA, complete cds.
GenBankCP0026841e-157CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306009.21e-113agamous-like MADS-box protein AGL80 isoform X1
TrEMBLR0GSK71e-114R0GSK7_9BRAS; Uncharacterized protein
STRINGCagra.0114s0045.1.p1e-115(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.29e-99AGAMOUS-like 87