PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0104s0003.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 818aa    MW: 92918 Da    PI: 5.7294
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0104s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53.1e-08454498246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g+WT+ Ed+ l + +++ G  +W  Ia  +g++Rt+ qc  r+q 
  Cagra.0104s0003.1.p 454 GPWTEAEDKNLPRIIEEKGLTDWVEIAVSLGTHRTPFQCLARYQR 498
                          89*****************************************96 PP
2Myb_DNA-binding43.86.1e-14506550146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r+ WT+eEd++l  av+++G ++W ++a+ +  gR + qc +rw k
  Cagra.0104s0003.1.p 506 RKEWTPEEDDQLRAAVELFGDKDWQSVANVLK-GRAGTQCSNRWKK 550
                          789****************************9.***********98 PP
3Myb_DNA-binding53.36.5e-17557602147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +grW+ eEd++ + av+++G+ +W++I++ ++ gRt+ qc++rw + 
  Cagra.0104s0003.1.p 557 KGRWSLEEDKRVKVAVTLFGSQNWHKISQFVP-GRTATQCRERWVNC 602
                          79******************************.***********986 PP
4Myb_DNA-binding44.73.1e-14609653147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg+WT+eEde+l++a+ ++G   W+++a+ +   Rt++qc  rw ++
  Cagra.0104s0003.1.p 609 RGKWTEEEDEKLKEAIGKHGYS-WSKVASQLA-CRTDNQCLRRWKTL 653
                          89******************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.739354447IPR017877Myb-like domain
SMARTSM0071735358449IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-5361377IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-5423459IPR009057Homeodomain-like
SuperFamilySSF466891.3E-10446503IPR009057Homeodomain-like
PROSITE profilePS500909.129448500IPR017877Myb-like domain
SMARTSM007171.4E-9452502IPR001005SANT/Myb domain
PfamPF002491.9E-7454498IPR001005SANT/Myb domain
CDDcd001672.25E-6455500No hitNo description
Gene3DG3DSA:1.10.10.604.2E-12460512IPR009057Homeodomain-like
SuperFamilySSF466891.2E-19485555IPR009057Homeodomain-like
PROSITE profilePS5129422.559501556IPR017930Myb domain
SMARTSM007172.6E-13505554IPR001005SANT/Myb domain
PfamPF002495.1E-13506550IPR001005SANT/Myb domain
CDDcd001678.20E-11508552No hitNo description
Gene3DG3DSA:1.10.10.602.1E-16513554IPR009057Homeodomain-like
SMARTSM007175.2E-14556605IPR001005SANT/Myb domain
PfamPF002495.1E-15557602IPR001005SANT/Myb domain
PROSITE profilePS5129413.459557603IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.5E-21558608IPR009057Homeodomain-like
CDDcd001676.58E-11559601No hitNo description
SuperFamilySSF466891.69E-25583658IPR009057Homeodomain-like
PROSITE profilePS5129426.579604658IPR017930Myb domain
SMARTSM007176.5E-13608656IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-19609654IPR009057Homeodomain-like
PfamPF002495.1E-13609653IPR001005SANT/Myb domain
CDDcd001671.18E-10611653No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MNRNSLYEAY GDDDDDDEDD IGEELEELRQ ACMVAGANSD EFSAKINSIE ADGGGGGEMP  60
SDSENEDDLM LRTISSQLAP SKDADLSGGP PIGLSLPSDS DSEDDFEMIR NITSQLALPM  120
DVPLPRIGLS DDDDEDEDFE TIRVIRRRFS AYDSEANFGN DSLGKKKQVH DLDNEPSREI  180
LSRSNTCESF PDHGKSVVTV PDSEDVRDGH SVDVHDITST EPLDHLDTSQ LSLMPAASST  240
FPEAAQAFVD AIRKNRAYQK FLRRKLEVIE ATIEQNEKHR KNVKIVKDFQ ASCKRRTKLA  300
LSQRKDPRVE LISARKCVPC DSSEGNDKKT SPLMLGPPEN PFVAKYRMAL EKYPVSVERR  360
NWSTEENKNL ATGLKQEVQK ILLYEAIEQS RDLEGSTYDI DTINESIRNL EITPEMIRQF  420
LPKINWDSLD IKDRSAAECE ARWMSSEDPL INHGPWTEAE DKNLPRIIEE KGLTDWVEIA  480
VSLGTHRTPF QCLARYQRSL NPSILRKEWT PEEDDQLRAA VELFGDKDWQ SVANVLKGRA  540
GTQCSNRWKK SLRPTRKGRW SLEEDKRVKV AVTLFGSQNW HKISQFVPGR TATQCRERWV  600
NCLEPKVNRG KWTEEEDEKL KEAIGKHGYS WSKVASQLAC RTDNQCLRRW KTLYPHQVVL  660
LQQARRLRKE AIVGNFVDRE SERPALVTGA ILALPEISLE PDPHSVALKN KRKAKQRKSD  720
AERQPKRRRK GLEKCSGDVC RQENATVCEK EPNNGGEEKS LELERYNEIQ DNAKEKQRRS  780
RKRVAETPNN TTGLRKLTPR RKKVSAVVPI KNQDALN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-294156529159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-294156529159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1710728KRKAKQRKSDAERQPKRRR
2780802RKRVAETPNNTTGLRKLTPRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0104s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0338270.0AY033827.1 Arabidopsis thaliana putative transcription factor (MYB4R1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296998.10.0snRNA-activating protein complex subunit 4
TrEMBLR0G3G90.0R0G3G9_9BRAS; Uncharacterized protein
STRINGCagra.0104s0003.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1