PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0096s0075.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 135aa    MW: 15626.1 Da    PI: 10.9938
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0096s0075.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind52.51.3e-1612100297
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT-.-HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhs.nfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                          F +++y+i++d++l++++sws ++n f++++  ef +k+Lp+  +   nf+ F+  L   gF++vk + k         +F+h++F +++
  Cagra.0096s0075.1.p  12 FYTRVYQIVDDPSLDSIVSWSGSNNGFIIWNVGEFCRKILPTSLEFGiNFSKFYSRLSSHGFNRVKGPGK--------LQFQHEYFVRDR 93 
                          999******************999******************9886559******************996........6*********** PP

                          XXXXXXX CS
         HSF_DNA-bind  91 kelleki 97 
                           ell+ +
  Cagra.0096s0075.1.p  94 PELLRMM 100
                          *999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-21797IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-218100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-238103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-1612100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-51235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-56476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MVHNFQRGLP SFYTRVYQIV DDPSLDSIVS WSGSNNGFII WNVGEFCRKI LPTSLEFGIN  60
FSKFYSRLSS HGFNRVKGPG KLQFQHEYFV RDRPELLRMM MAQVLTAKRN AKKAKAKARR  120
DRVQVEGLFK HLQI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0096s0075.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428835.15e-51PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_010431177.18e-50PREDICTED: heat stress transcription factor A-6a-like
TrEMBLR0GJE45e-95R0GJE4_9BRAS; Uncharacterized protein
STRINGCagra.0096s0075.1.p1e-96(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.13e-38Winged helix-turn-helix transcription repressor DNA-binding