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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0096s0069.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 277aa MW: 30626.3 Da PI: 5.593 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.4 | 7.2e-18 | 45 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr ++ +g+Wv eIr p +k++r++lg++ tae Aa+a++aa ++l+g Cagra.0096s0069.1.p 45 KYKGVRMRS-WGSWVTEIRAP---NKKTRIWLGSYSTAEAAARAYDAALLCLKG 94 8*****998.**********9...347************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.73E-18 | 44 | 104 | No hit | No description |
Pfam | PF00847 | 9.7E-12 | 45 | 94 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-30 | 45 | 104 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-19 | 45 | 104 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.7E-34 | 45 | 108 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.983 | 45 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-9 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-9 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MVKQEIKIQV TTSSISSSLS HSSSPSSSSS SPLRHRQSSK NKIQKYKGVR MRSWGSWVTE 60 IRAPNKKTRI WLGSYSTAEA AARAYDAALL CLKGPKANLN FPHSTSHFLM NIDEKTLLSP 120 KSIQKVASQA ANSFSYEPFT PPSDEDDHDH DHDDNELHNH PSPSSSVASS PTDDGDLASH 180 QHDCDDRLHH HPSPSSSAAS SPPHNDDDGD LVSLMESFVD FNEHVSLMDQ SWYGFDHSEM 240 FLANGSPFDY SPQLNSSKTT MDDLYDDADI QLWSFT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 45 | 103 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0096s0069.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC010704 | 1e-132 | AC010704.6 Arabidopsis thaliana chromosome 1 BAC T5M16 genomic sequence, complete sequence. | |||
GenBank | AY560843 | 1e-132 | AY560843.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g77640) mRNA, complete cds. | |||
GenBank | BT012629 | 1e-132 | BT012629.1 Arabidopsis thaliana At1g77640 mRNA, complete cds. | |||
GenBank | CP002684 | 1e-132 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006302670.1 | 1e-135 | ethylene-responsive transcription factor ERF013 | ||||
Swissprot | Q9SFE4 | 4e-66 | ERF12_ARATH; Ethylene-responsive transcription factor ERF012 | ||||
TrEMBL | R0IFN4 | 1e-133 | R0IFN4_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0096s0069.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2999 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77640.1 | 8e-51 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0096s0069.1.p |
Publications ? help Back to Top | |||
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