PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0096s0069.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 277aa    MW: 30626.3 Da    PI: 5.593
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0096s0069.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.2e-184594255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +ykGVr ++ +g+Wv eIr p   +k++r++lg++ tae Aa+a++aa ++l+g
  Cagra.0096s0069.1.p 45 KYKGVRMRS-WGSWVTEIRAP---NKKTRIWLGSYSTAEAAARAYDAALLCLKG 94
                         8*****998.**********9...347************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.73E-1844104No hitNo description
PfamPF008479.7E-124594IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-3045104IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1945104IPR016177DNA-binding domain
SMARTSM003802.7E-3445108IPR001471AP2/ERF domain
PROSITE profilePS5103221.98345102IPR001471AP2/ERF domain
PRINTSPR003677.2E-94657IPR001471AP2/ERF domain
PRINTSPR003677.2E-96884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MVKQEIKIQV TTSSISSSLS HSSSPSSSSS SPLRHRQSSK NKIQKYKGVR MRSWGSWVTE  60
IRAPNKKTRI WLGSYSTAEA AARAYDAALL CLKGPKANLN FPHSTSHFLM NIDEKTLLSP  120
KSIQKVASQA ANSFSYEPFT PPSDEDDHDH DHDDNELHNH PSPSSSVASS PTDDGDLASH  180
QHDCDDRLHH HPSPSSSAAS SPPHNDDDGD LVSLMESFVD FNEHVSLMDQ SWYGFDHSEM  240
FLANGSPFDY SPQLNSSKTT MDDLYDDADI QLWSFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-14451031473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0096s0069.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0107041e-132AC010704.6 Arabidopsis thaliana chromosome 1 BAC T5M16 genomic sequence, complete sequence.
GenBankAY5608431e-132AY560843.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g77640) mRNA, complete cds.
GenBankBT0126291e-132BT012629.1 Arabidopsis thaliana At1g77640 mRNA, complete cds.
GenBankCP0026841e-132CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302670.11e-135ethylene-responsive transcription factor ERF013
SwissprotQ9SFE44e-66ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLR0IFN41e-133R0IFN4_9BRAS; Uncharacterized protein
STRINGCagra.0096s0069.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77640.18e-51ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]