PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0084s0074.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 365aa    MW: 41277.4 Da    PI: 4.3049
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0084s0074.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.6e-20123173155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr+++ +g+W+AeIrdp +   r+r++lg+f taeeAa  +++a+ +l+g
  Cagra.0084s0074.1.p 123 KKFRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFETAEEAAVVYDNAAIRLRG 173
                          59********.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.39E-34123180No hitNo description
Gene3DG3DSA:3.30.730.103.4E-30124181IPR001471AP2/ERF domain
PfamPF008474.5E-12124173IPR001471AP2/ERF domain
PROSITE profilePS5103223.775124181IPR001471AP2/ERF domain
SMARTSM003801.7E-39124187IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-21124182IPR016177DNA-binding domain
PRINTSPR003672.7E-10125136IPR001471AP2/ERF domain
PRINTSPR003672.7E-10147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDEYINFRPL KYTEHKTSVT KYTKKSSSPA KKLSDQSPPD SFRKVRISFT DPDATDSSSD  60
EDEEDFLFPR RRVKRFVNEI TVEPACNNAS AAVSMKERKR LSDESLQSPA KRPLKVSVSG  120
QTKKFRGVRQ RPWGKWAAEI RDPEQRRRIW LGTFETAEEA AVVYDNAAIR LRGPDALTNF  180
SIPPQEEEEE EEPEPVIDTK PDFNITTTTT TTTTSSSEST EDFQHLSSPT SVLNLRSEEI  240
QQIQQPFKSS KPEPEISEAP WWHTGFSTGT GETTDDSFPL NTLFLDSYFN ESPPEMSIFD  300
QPMGHHQGFY ENDDIFSDMI LESESIINTI GDDDDELMTS SSIKDIGSMF SDFDDSLISD  360
LLVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-22123182161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-22123182464ATERF1
3gcc_A7e-22123182464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0084s0074.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280717.10.0ethylene-responsive transcription factor CRF3
SwissprotQ9FK121e-160CRF3_ARATH; Ethylene-responsive transcription factor CRF3
TrEMBLR0GMR30.0R0GMR3_9BRAS; Uncharacterized protein
STRINGCagra.0084s0074.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-139cytokinin response factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  3. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]