PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0027s0011.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family SRS
Protein Properties Length: 213aa    MW: 23603.1 Da    PI: 6.9084
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0027s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702181.73.1e-56672112150
               DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsst 89 
                          rs t+sCqdCGnqakk+C+h RCRtCCks+g+dC  hv+stW+p+akrrerqq+ ++++s+  + a    + +k  re  +++ ++l+s+
  Cagra.0027s0011.1.p  67 RSLTISCQDCGNQAKKGCTHGRCRTCCKSHGLDCPIHVRSTWIPIAKRRERQQRIQTPTSDPITGAdrVGNIPKPYRE--TDQPATLDSS 154
                          57789****************************************************999988766323344444444..4666666666 PP

               DUF702  90 klssaeskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydq 150
                           l+++        +++Peev s+a+frcvr+s+ dd g  ++aYqt+v i+GhvfkGiLy+q
  Cagra.0027s0011.1.p 155 GLEMGA-----RDATFPEEVISDALFRCVRMSGADDdGSCQYAYQTTVGIAGHVFKGILYNQ 211
                          666654.....4577******************9987899********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051428.8E-5370211IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.4E-2572114IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.6E-24165211IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MAGIGSSRNN EEDNQQKANW VWYRNTNNNN PSTSTSHHVH DNHIWQQPSL DLYPGQMDVC  60
DLTTSSRSLT ISCQDCGNQA KKGCTHGRCR TCCKSHGLDC PIHVRSTWIP IAKRRERQQR  120
IQTPTSDPIT GADRVGNIPK PYRETDQPAT LDSSGLEMGA RDATFPEEVI SDALFRCVRM  180
SGADDDGSCQ YAYQTTVGIA GHVFKGILYN QD*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0027s0011.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296736.11e-160protein SHI RELATED SEQUENCE 4
SwissprotQ9SI191e-113SRS4_ARATH; Protein SHI RELATED SEQUENCE 4
TrEMBLR0HIX81e-159R0HIX8_9BRAS; Uncharacterized protein
STRINGCagra.0027s0011.1.p1e-159(Capsella grandiflora)
STRINGXP_006296736.11e-159(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151171519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18120.11e-111SHI-related sequence 4