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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.0027s0011.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
SRS |
Protein Properties |
Length: 213aa MW: 23603.1 Da PI: 6.9084 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.0027s0011.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 181.7 | 3.1e-56 | 67 | 211 | 2 | 150 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsst 89
rs t+sCqdCGnqakk+C+h RCRtCCks+g+dC hv+stW+p+akrrerqq+ ++++s+ + a + +k re +++ ++l+s+
Cagra.0027s0011.1.p 67 RSLTISCQDCGNQAKKGCTHGRCRTCCKSHGLDCPIHVRSTWIPIAKRRERQQRIQTPTSDPITGAdrVGNIPKPYRE--TDQPATLDSS 154
57789****************************************************999988766323344444444..4666666666 PP
DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydq 150
l+++ +++Peev s+a+frcvr+s+ dd g ++aYqt+v i+GhvfkGiLy+q
Cagra.0027s0011.1.p 155 GLEMGA-----RDATFPEEVISDALFRCVRMSGADDdGSCQYAYQTTVGIAGHVFKGILYNQ 211
666654.....4577******************9987899********************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 213 aa
Download sequence Send
to blast |
MAGIGSSRNN EEDNQQKANW VWYRNTNNNN PSTSTSHHVH DNHIWQQPSL DLYPGQMDVC 60 DLTTSSRSLT ISCQDCGNQA KKGCTHGRCR TCCKSHGLDC PIHVRSTWIP IAKRRERQQR 120 IQTPTSDPIT GADRVGNIPK PYRETDQPAT LDSSGLEMGA RDATFPEEVI SDALFRCVRM 180 SGADDDGSCQ YAYQTTVGIA GHVFKGILYN QD*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |