PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG034129.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 902aa    MW: 99793.3 Da    PI: 6.6897
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG034129.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.62.1e-22127227198
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a +L +gD+v+F   ++++ +
  CCG034129.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSATRLVAGDSVLFI--WNEKNQ 220
                  99*****************************8544444..48************************************************..788888 PP

                  .EEEEE- CS
           B3  92 lvvkvfr 98 
                  l++++ r
  CCG034129.1 221 LLLGIKR 227
                  8998876 PP
2Auxin_resp117.89.1e-39253334181
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrs 81 
                  aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m+fete+ss rr++Gt++g+sdld vrWpnS+Wrs
  CCG034129.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYLKAVYyTRVSVGMRFRMMFETEESSVRRYMGTITGISDLDAVRWPNSQWRS 334
                  79*********************************989*******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.76E-48112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-40119242IPR015300DNA-binding pseudobarrel domain
CDDcd100175.17E-20126219No hitNo description
PfamPF023629.0E-21127228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97127229IPR003340B3 DNA binding domain
SMARTSM010197.5E-22127229IPR003340B3 DNA binding domain
PfamPF065074.5E-34253334IPR010525Auxin response factor
SuperFamilySSF542779.81E-7757841No hitNo description
PfamPF023095.2E-7760855IPR033389AUX/IAA domain
PROSITE profilePS5174522.5766850IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    Send to blast
MRHSSAGFNP QTHEVEKRVL NSELWHACAG PLVSLPAVGS RAVYFPQGHS EQVAASTNKE  60
VDAQIPSYPS LPAQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDA YLPADMGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SATRLVAGDS VLFIWNEKNQ LLLGIKRAIR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYLKAVYYT RVSVGMRFRM  300
MFETEESSVR RYMGTITGIS DLDAVRWPNS QWRSAKVGWD ESTDGERQPR VSLWEIEPLT  360
TFPTYPSPFP LRLKRPWSPG LPSFHGIKND DLGKNSSLMW LRGDGDCGVQ SLNFQGTGVS  420
PWVQPRVDAS MLGLQNDVYQ TMATAAFQEM RTLDPSKSSS ASLLQFQQHQ NLPIRSAALM  480
QPRMLQQSPP QQTFLQGVQE NKHQSQNPSQ SHLIQQQLLH HHLLDSPHQQ QQQQPFLQQQ  540
QLADQQIPNG ASATISQYAS ASQSLTPPLQ AISLCQQHSY SDSNGKPATI PVVSSLQSLL  600
DSFPPNESSH LLSLPRINPL VTSSGWPSKR AAVESLTSSG APQCMVTQVE QLGLLQTSIT  660
PSSVSLPPFP GRECSIDQDG GTDQQNHLLF GVNIEPSSLL LQNGMSSLRG VGSDSDSTTI  720
PFSSNYMSTA GTNFSLNPAM TPSSCIDESC FLQSTENVSQ GNPPTRTFVK VYKSGSFGRS  780
LDITKFSNYN ELRSELSRMF GLEGQLEDPL RSGWQLVFID RENDVLLLGD GPWPEFVNSV  840
WCIKILSPQE VQQMGKRGLE LLNSFPIQRL SNGSCDDYAN RQDSKSLSTG ITSVGSLDYW  900
TI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1601635747388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012265.10.0PREDICTED: auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1L6K4480.0A0A1L6K448_POPTO; Auxin response factor
STRINGPOPTR_0001s36900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]