PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG034114.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

SRS

Protein Properties

Length: 314aa MW: 34106.5 Da PI: 8.1484

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG034114.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	221.2	2.2e-68	93	245	4	153
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelkskkqsalsstklssae 95 g+++CqdCGnqakkdC h RCRtCCksrgf C+thvkstWv+aakrrerqqqlaa+++++++++ +++kr+re+ + +s+l++t+l+ ++ CCG034114.1 93 GGMNCQDCGNQAKKDCPHLRCRTCCKSRGFPCTTHVKSTWVSAAKRRERQQQLAALQQHNQQQEqhqqqfLGENPKRQREN-HGGASSLACTRLAATT 189 789**************************************************99988777755543333444555543.5566667777766665 PP DUF702 96 skkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 + le + +P+ev+sea+frcv+vs++dd++++laYqtav+igGhvf+GiLydqG++ CCG034114.1 190 --SGLELTAFPPEVNSEAIFRCVKVSAMDDADDQLAYQTAVNIGGHVFRGILYDQGAD 245 ..5689999*********************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.2E-65	94	245	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.6E-25	96	138	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.9E-25	196	243	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MAGWFYLGGG EGPSRKQDQE KEDNNSSLFL YRPSNEEIYN NKGFELWPQY YPQQQNMNSF 60 SFGVGPSRRS LSDDHSSRSG FSLTRQGGGG LRGGMNCQDC GNQAKKDCPH LRCRTCCKSR 120 GFPCTTHVKS TWVSAAKRRE RQQQLAALQQ HNQQQEQHQQ QFLGENPKRQ RENHGGASSL 180 ACTRLAATTS GLELTAFPPE VNSEAIFRCV KVSAMDDADD QLAYQTAVNI GGHVFRGILY 240 DQGADGRYAS TGGESSSSGA QQLLITAAAT STTGTTTNTG NPAAGNTLLD PSSLYPAPLN 300 AFIAGTQFFA PPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011045159.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9LQZ5	2e-93	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A2K2ALD7	0.0	A0A2K2ALD7_POPTR; Uncharacterized protein
STRING	POPTR_0005s25560.1	1e-166	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	4e-72	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]