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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
CCG034098.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 335aa MW: 37112.8 Da PI: 9.9319 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| CCG034098.1 | genome | LZU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 380.4 | 2.9e-116 | 1 | 335 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye.........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalll 86
mdd +re r+k+ y+ p++s+k q+m ++aerda+i+e+n+alsekkaa+aerdma+lqrd+a+aern+al+erdn++++l++
CCG034098.1 1 MDDGVHREngRHKAdEYKtaqgqwlvqPQPSMK-----QIMGIMAERDAAIHEKNMALSEKKAAIAERDMALLQRDSAIAERNNALLERDNAIATLQY 93
888888878899999899777666665556666.....************************************************************ PP
GAGA_bind 87 vensla....salpvgvqvlsgtksidslqqlse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvk 179
+ens a s++p+g++ ++g k++++ qq+ + p +++ a+++re++++++ pi+ a +e++k++ r+k+pk +k++ ++kk++ks kvk
CCG034098.1 94 RENSFAsantSSSPPGYHNSRGMKHMHHQQQHIHlPLMNEGAYGTREMQTSDTVPISPVA---SEAAKPR---RGKRPKDTKSTPANKKTSKSAMKVK 185
***9988888999******************7776999*****************88644...4444554...4455566666655555666667777 PP
GAGA_bind 180 kesader............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstk 249
+es+d + sk+++k +dl+ln+v++De+t+P+PvCsCtG rqCYkWGnGGWqS+CCtt++S+yPLP++++
CCG034098.1 186 RESEDLNnmfgksnewkngedmngggdglnkqlaaSKSDWKGQDLGLNQVAFDETTMPAPVCSCTGFFRQCYKWGNGGWQSSCCTTALSMYPLPAVPN 283
777763347788888999******************************************************************************** PP
GAGA_bind 250 rrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+r+aR++grKmS++af+klL++LaaeG dlsnpvDLkdhWAkHGtn+++ti+
CCG034098.1 284 KRHARVGGRKMSGSAFSKLLSRLAAEGQDLSNPVDLKDHWAKHGTNRYITIK 335
***************************************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 335 aa
Download sequence Send
to blast |
MDDGVHRENG RHKADEYKTA QGQWLVQPQP SMKQIMGIMA ERDAAIHEKN MALSEKKAAI 60
AERDMALLQR DSAIAERNNA LLERDNAIAT LQYRENSFAS ANTSSSPPGY HNSRGMKHMH 120
HQQQHIHLPL MNEGAYGTRE MQTSDTVPIS PVASEAAKPR RGKRPKDTKS TPANKKTSKS 180
AMKVKRESED LNNMFGKSNE WKNGEDMNGG GDGLNKQLAA SKSDWKGQDL GLNQVAFDET 240
TMPAPVCSCT GFFRQCYKWG NGGWQSSCCT TALSMYPLPA VPNKRHARVG GRKMSGSAFS 300
KLLSRLAAEG QDLSNPVDLK DHWAKHGTNR YITIK
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982263 | 0.0 | FJ982263.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds. |
