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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG034010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRF | ||||||||
Protein Properties | Length: 529aa MW: 57591.9 Da PI: 7.6245 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.5 | 2.7e-24 | 172 | 214 | 2 | 44 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrCrRtDGKkWRCsr+v ++kk+CErH+hrgr rsrk++e CCG034010.1 172 LEPGRCRRTDGKKWRCSRDVAPDKKYCERHMHRGRPRSRKHVE 214 69***************************************97 PP | |||||||
2 | QLQ | 51 | 4.5e-18 | 122 | 154 | 2 | 34 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +FT+aQ+++L++Q+++yKy+a++ vPp+Ll + CCG034010.1 122 PFTNAQWNELERQAMIYKYMASSINVPPHLLIP 154 8*****************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.0E-10 | 121 | 157 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.719 | 122 | 157 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.3E-12 | 122 | 154 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.55 | 171 | 215 | IPR014977 | WRC domain |
Pfam | PF08879 | 5.0E-20 | 173 | 214 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 529 aa Download sequence Send to blast |
MGYVLRVRLA SFFAGAATAS FAGIYLLYKD FQVAHDAISQ QDFYDGSSCN LHRPFDSGPT 60 SSYDRNKSLI NYSREHKYSV GAYGGAVGVR TLQPSDTSES TITTASAFKS PGGNMAAYLG 120 FPFTNAQWNE LERQAMIYKY MASSINVPPH LLIPTPLMGN GLDVRFTNRA DLEPGRCRRT 180 DGKKWRCSRD VAPDKKYCER HMHRGRPRSR KHVELNSSSN SNSSKKSRHD PSICTESPVT 240 VAISNPTINN NNSGSASHDH FVGTMPQPYI QTPVFVNKSS EKIATFDANG AFGSTYKEPR 300 SLDWMLKGGT GPIVTNDQQW PHLVHTEIGL ATEGSFNNAS VLKQHYREES LNLNSYGNLN 360 AREDQHSSQY SLFLDGAPRS FIDAWSNDAN SGNTSSMSSD GKLPLSPLSL SMGGNRSIDD 420 ERGQIQMGLG LIKPDQNQEC GGDTSSTPGG PLAEVLQLRT VNIDTGTNQS SSMIENGDSI 480 CPPATRVSSP SEVLQKTLAS LSDSSGNSSP TLASSRTKPE IAMLWLNQA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011044718.1 | 0.0 | PREDICTED: growth-regulating factor 7 | ||||
TrEMBL | A0A3N7G355 | 0.0 | A0A3N7G355_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s00860.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7324 | 28 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53660.1 | 4e-37 | growth-regulating factor 7 |