PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG033968.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Nin-like | ||||||||
Protein Properties | Length: 244aa MW: 28390.3 Da PI: 7.304 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 81.8 | 6.7e-26 | 135 | 183 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++le+++k+F++pi++AA+e++v+lTvLK++CR++ I+RWPhRkiksl CCG033968.1 135 ALQLEEIQKHFNMPITQAAREMKVGLTVLKKRCRELKIMRWPHRKIKSL 183 689********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.075 | 118 | 205 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 5.6E-23 | 136 | 183 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MENPPDFDVW DLGVDDQDTF QKISELPHFE SLFDPSNINQ FKHLEDISSD NIFSESNLES 60 WYNQENAYVD TKPVLNPGIH ASFGQNLDNN VIKGDHHLKG FSMFLVQSDC ASSSSVKEEE 120 EEESRKMSGR KRSVALQLEE IQKHFNMPIT QAAREMKVGL TVLKKRCREL KIMRWPHRKI 180 KSLNSLINNV KEMGLSEHDT IMLKEHKRLI EKLPDLELTE RTKKLRQACF KANYKKRRLS 240 AAYP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011044734.1 | 0.0 | PREDICTED: protein RKD4 | ||||
TrEMBL | A0A2K1XGA6 | 1e-157 | A0A2K1XGA6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s01410.1 | 1e-158 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6898 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 3e-40 | RWP-RK domain-containing protein |