PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033923.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 278aa    MW: 31256.9 Da    PI: 5.1749
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033923.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.11.1e-25121333127
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkdkevlsk.kg 97 
                  +G rF+Pt +el++++L++k+ g+++ + + i+++diy+++PwdLp  ++++++e yfFs+ + k++  ++ r nr+t++g W+a+g+  +v+s+ +g
  CCG033923.1  12 VGDRFSPTYDELINHFLRHKLLGNDHLV-SKIPQLDIYQFDPWDLP-WINSKDREGYFFSPLHAKNSyiNNGRINRSTNTGSWQAKGRGSKVTSErNG 107
                  688**********************887.77***************.788999******9877766555999********************998788 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyr 127
                  e+  +kk++v      ++    + vmhe++
  CCG033923.1 108 EVLAIKKIFVHSCI--KD--GFKYVMHEFS 133
                  8899****998733..33..3579999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.34710155IPR003441NAC domain
PfamPF023658.4E-1412133IPR003441NAC domain
SuperFamilySSF1019412.22E-2812155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MTSKTTCLAS DVGDRFSPTY DELINHFLRH KLLGNDHLVS KIPQLDIYQF DPWDLPWINS  60
KDREGYFFSP LHAKNSYINN GRINRSTNTG SWQAKGRGSK VTSERNGEVL AIKKIFVHSC  120
IKDGFKYVMH EFSASFNLPN CRDLRALVLC KVMMKTLDKK TEGSYKKVKE TEEEASSPLA  180
SDEDQQTDNL ICDDGGTNCL AVSASANHAV EFTIPEEVDL EIPPHLQLFP GYDQQDYNHG  240
FTFYDQPLIL TGQLHADNGP GTSSTEEDLF NGLGPLWA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-171313318139Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044472.10.0PREDICTED: NAC domain-containing protein 18-like isoform X1
RefseqXP_011044473.10.0PREDICTED: NAC domain-containing protein 18-like isoform X1
RefseqXP_011044474.10.0PREDICTED: NAC domain-containing protein 18-like isoform X1
TrEMBLA0A1L6K5760.0A0A1L6K576_POPTO; Uncharacterized protein
STRINGPOPTR_0013s07720.11e-109(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3974122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.17e-23NAC domain containing protein 96