PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033883.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 249aa    MW: 27898.7 Da    PI: 10.0762
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033883.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.38.9e-34141421128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratk...sgyWkatgkdkevls 94 
                  lp G+rFhPtdeelvv+yLk+kv g ++++ +vi+e+d+++ +P++Lp ++   +++ yfFs+++ +    gk+ +r++    sgyWk  gk k++++
  CCG033883.1  14 LPIGYRFHPTDEELVVHYLKRKVLGLPMPA-SVIPEFDVFQNDPSSLPGNL---KEKRYFFSQKKLNDLDlGKKCKRTAGsgaSGYWKPIGKGKQIVA 107
                  699***************************.99***************554...45789**999988775478888865456699**********999 PP

          NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  + ++++vg++ktL f + +++  +k++Wvmh y l
  CCG033883.1 108 SdSSKAVGTRKTLFFKERKHSIKTKSQWVMHVYCL 142
                  867788**********9999999*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-3711168IPR003441NAC domain
PROSITE profilePS5100539.40214168IPR003441NAC domain
PfamPF023653.4E-2115141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MERPSFVENG GFKLPIGYRF HPTDEELVVH YLKRKVLGLP MPASVIPEFD VFQNDPSSLP  60
GNLKEKRYFF SQKKLNDLDL GKKCKRTAGS GASGYWKPIG KGKQIVASDS SKAVGTRKTL  120
FFKERKHSIK TKSQWVMHVY CLAGSATGPK TTQMEEVGDW VAYSVFQRKR KPRKNVVISN  180
PSNINETRNV EITSPSFMDF MMEQSSDGVG PPSPCSSGVT EVSSNEVDQE EISSSSISLF  240
SYPRNRNRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-221417417171NO APICAL MERISTEM PROTEIN
1ut4_B4e-221417417171NO APICAL MERISTEM PROTEIN
1ut7_A4e-221417417171NO APICAL MERISTEM PROTEIN
1ut7_B4e-221417417171NO APICAL MERISTEM PROTEIN
3swm_A5e-221417420174NAC domain-containing protein 19
3swm_B5e-221417420174NAC domain-containing protein 19
3swm_C5e-221417420174NAC domain-containing protein 19
3swm_D5e-221417420174NAC domain-containing protein 19
3swp_A5e-221417420174NAC domain-containing protein 19
3swp_B5e-221417420174NAC domain-containing protein 19
3swp_C5e-221417420174NAC domain-containing protein 19
3swp_D5e-221417420174NAC domain-containing protein 19
4dul_A4e-221417417171NAC domain-containing protein 19
4dul_B4e-221417417171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166173QRKRKPRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7699960.0KP769996.1 Populus tomentosa NAC domain transcription factor (Potri.017G063300) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012154.10.0PREDICTED: NAC domain-containing protein 68-like
TrEMBLB9N0W91e-163B9N0W9_POPTR; Uncharacterized protein
STRINGPOPTR_0017s09030.11e-164(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-44NAC domain containing protein 83