PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 718aa MW: 82444.5 Da PI: 8.8851

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG033707.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	97.4	1.6e-30	12	104	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s s++s+r+g i++r fvC keg+r +++k +++ +r+raetr+gCka+l+vk ++ g+w+v+ ++ eHnHel+p CCG033707.1 12 FYNSYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRIDKDKParsDVRVKRPRAETRVGCKAMLVVKIQDCGRWVVSAFVREHNHELVP 104 9*************************************999988777889999**********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.8E-29	12	104	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.4E-32	225	317	IPR018289	MULE transposase domain
Pfam	PF04434	1.5E-11	493	539	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.053	505	541	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.1E-8	516	543	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 718 aa Download sequence Send to blast
MEFESEEAAK AFYNSYARRV GFSTRVSMSR RSRRDGAIIQ RSFVCAKEGF RIDKDKPARS 60 DVRVKRPRAE TRVGCKAMLV VKIQDCGRWV VSAFVREHNH ELVPPDKVHC LRSHRHVSGS 120 AKSLIDTLQC AGIGPSGIMS ALIKEYGGIS NVGFTERDCR NYMRSSRQRT LGGDTQHLLD 180 YLRNKQAENS AFFYAVQGDE DQCMSNIFWA DAKARANYTY FGDTVTFDTT YRSNRYRLPF 240 APFTGVNHHG QPVLFGCALL VNESEASFLW LFKTWLMAMS ERPPVSITTD HDRVICLAVN 300 QVFPETRHRI CKWHIFKEFQ EKLSHVLSEH PNFEAELHKC VNLTESVEEF ESCWLSLLNR 360 YNLREHEWLQ AVYTDRRQWV PAYLRDTFFA EMSITQRSDS INSYFDGYIN ASTTLQLFVK 420 QYEKALESRY EKEVKADYDS INTAPVLKTP SPMEKQVAEL YSRKLFLKFQ EELVETLTFL 480 ATKVGDDGAI TTYRVAKFGE SHKAYTVSFT VREMKASCSC LMFEFSGLLC RHILTVFRVT 540 NVLTLPSHYV LKRWTRNAKS GVILEEHASD FLSSSRESLT FRYSNLRHEA LKYVDNGIQS 600 LEIYNVSMDA LQEAANKVAL ARKNGGKVAI ANRAGREEYP PQGSQANNNN HNQQQGSEQP 660 ASGDDQDKKI QKLHHKLDRA RQKCEAYRAN LLSVLKDIEE QKLQLSIKVQ NIKLGMKD

Sequence ? help Back to Top

Protein Sequence Length: 718 aa Download sequence Send to blast

MEFESEEAAK AFYNSYARRV GFSTRVSMSR RSRRDGAIIQ RSFVCAKEGF RIDKDKPARS  60
DVRVKRPRAE TRVGCKAMLV VKIQDCGRWV VSAFVREHNH ELVPPDKVHC LRSHRHVSGS  120
AKSLIDTLQC AGIGPSGIMS ALIKEYGGIS NVGFTERDCR NYMRSSRQRT LGGDTQHLLD  180
YLRNKQAENS AFFYAVQGDE DQCMSNIFWA DAKARANYTY FGDTVTFDTT YRSNRYRLPF  240
APFTGVNHHG QPVLFGCALL VNESEASFLW LFKTWLMAMS ERPPVSITTD HDRVICLAVN  300
QVFPETRHRI CKWHIFKEFQ EKLSHVLSEH PNFEAELHKC VNLTESVEEF ESCWLSLLNR  360
YNLREHEWLQ AVYTDRRQWV PAYLRDTFFA EMSITQRSDS INSYFDGYIN ASTTLQLFVK  420
QYEKALESRY EKEVKADYDS INTAPVLKTP SPMEKQVAEL YSRKLFLKFQ EELVETLTFL  480
ATKVGDDGAI TTYRVAKFGE SHKAYTVSFT VREMKASCSC LMFEFSGLLC RHILTVFRVT  540
NVLTLPSHYV LKRWTRNAKS GVILEEHASD FLSSSRESLT FRYSNLRHEA LKYVDNGIQS  600
LEIYNVSMDA LQEAANKVAL ARKNGGKVAI ANRAGREEYP PQGSQANNNN HNQQQGSEQP  660
ASGDDQDKKI QKLHHKLDRA RQKCEAYRAN LLSVLKDIEE QKLQLSIKVQ NIKLGMKD

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011030709.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2K1YKC9	0.0	A0A2K1YKC9_POPTR; Uncharacterized protein
STRING	POPTR_0011s14880.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]