PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033657.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 778aa    MW: 86388.2 Da    PI: 6.9341
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033657.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.71.1e-23153254199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++p++ ae++      + +++ s++l  +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   + +++el
  CCG033657.1 153 FCKTLTASDTSTHGGFSVPRRAAEDCfpsldyK-QQRPSQELLAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGEDGEL 247
                  99****************************963.3445679************************************************..449999* PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++++r+
  CCG033657.1 248 RLGIRRA 254
                  ****996 PP
2Auxin_resp114.41e-37279360182
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                  +++a+stksvF+v Y+Pra+++ Fvv+++k+ k++++ v++G+Rfkm+fe++ds+err+sG+v+g+ dldp++WpnSkWr+L
  CCG033657.1 279 VSNAISTKSVFTVSYSPRATHAVFVVPYQKYIKSITNAVCIGTRFKMRFEMDDSPERRCSGVVTGTADLDPYKWPNSKWRCL 360
                  5799*****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-40143267IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-44145268IPR015300DNA-binding pseudobarrel domain
CDDcd100178.84E-22151253No hitNo description
PROSITE profilePS5086313.07153255IPR003340B3 DNA binding domain
PfamPF023627.9E-22153254IPR003340B3 DNA binding domain
SMARTSM010192.0E-22153255IPR003340B3 DNA binding domain
PfamPF065074.4E-32279360IPR010525Auxin response factor
PfamPF023091.0E-6638734IPR033389AUX/IAA domain
SuperFamilySSF542778.83E-10644729No hitNo description
PROSITE profilePS5174523.036650732IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MEIDLNHPVT EVEKNSFCTN GDSSSSSNSS SSPVSSSIYL ELWHACAGPL TSLPKKGNVV  60
VYFPQGHLEQ LASSSPLSHR DMPNFDLHPQ IFCKVVNVQL LANRENDEVY TRLTLLPQPE  120
VVGQDLEGKE LHELGVDGEG DDASPTKSTP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP  180
SLDYKQQRPS QELLAKDLHG VEWRFRHIYR GQPRRHLLTT GWSIFVSQKN LVSGDAVLFL  240
RGEDGELRLG IRRAARPRNG LPDSVTSKQN SLPSALSQVS NAISTKSVFT VSYSPRATHA  300
VFVVPYQKYI KSITNAVCIG TRFKMRFEMD DSPERRCSGV VTGTADLDPY KWPNSKWRCL  360
MVRWDEDVMS DHQERVSPWE IDSSVSLPPL IIQSSPRLKK LRAGLQAAPP DKPIAGGGGF  420
LDFKESVRSS KVLQGQENVG LLSPVYRCDT VNHPLDFEVR NKAQQNLILT GIEKAKISEL  480
TRAHPATHTG FTESDRFLKV LQGQEICSLS SVGALGKPNI GHSSFQMYPG PRPAFYPVAA  540
ESLRSMYFPY GDAYKNGQDP RTQSYAIFSR ENAHFNTSSI QTCVVREEVR KPNQSSEYKT  600
KESISTAPAL CANLRNQKDD FFNGNATGCK LFGFSLNAET SPNSQNTSKR SCTKVHKQGS  660
LVGRAIDLSR LNSYSDLLNE LERLFSMEGL LRNPEEGWRI LYTDSENDVM VVGDDPWPEF  720
CNVATKIHIY TQEEVEKMTI GITGDDTQSC LEQAPVMMEA SKSSSVGQPD CSPTVIRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-117243822353Auxin response factor 1
4ldy_B1e-117243822353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1447351e-84EF144735.1 Populus trichocarpa clone WS01117_J13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044386.10.0PREDICTED: auxin response factor 4 isoform X1
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A3N7FHN90.0A0A3N7FHN9_POPTR; Auxin response factor
STRINGcassava4.1_001995m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52363252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]