PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG033582.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bZIP

Protein Properties

Length: 372aa MW: 41895.2 Da PI: 7.4697

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG033582.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.9	2.8e-10	74	116	2	41
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 +++k +rr+++NReAAr+sR+RKk ++++Le k ++Le+e CCG033582.1 74 PADKIQRRLAQNREAARKSRLRKKVYVQQLESsrlKLAQLEQE 116 57999**************************833344444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.0E-7	73	137	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.2E-7	75	116	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.507	75	131	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.06E-7	77	131	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.8E-8	78	131	No hit	No description
PROSITE pattern	PS00036	0	80	95	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.5E-30	174	250	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MGSTSTQIAA MRGMGFYEPF HQISSWGHAY RDDGSLNIGP STIVQVDAGL DNKTEHVSHE 60 SMEPSRSDQE AHKPADKIQR RLAQNREAAR KSRLRKKVYV QQLESSRLKL AQLEQELERA 120 RHQARREFYS LYYGAYIGGS ASDSSHLGFS GTGNPGIAAF EMEYGHWVEE QLKQVSELRN 180 ALQAHITDIE LRILVENGLN HYKNLFRMKT DAAKADVFYL ISGKWRTSVE RFFLWIGGFR 240 PSELLNVLMS QLQPLTDQQL VDVCNLSQSS RQAEDALTQG IDKLQQTLSQ SIAADVMGDG 300 GYGDQMADAI KSLEALEGFV NQADHLRQQT LRHMSRILTI RQAARGLLAL GEYFHRLRAL 360 SSLWAARPCE PA

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MGSTSTQIAA MRGMGFYEPF HQISSWGHAY RDDGSLNIGP STIVQVDAGL DNKTEHVSHE  60
SMEPSRSDQE AHKPADKIQR RLAQNREAAR KSRLRKKVYV QQLESSRLKL AQLEQELERA  120
RHQARREFYS LYYGAYIGGS ASDSSHLGFS GTGNPGIAAF EMEYGHWVEE QLKQVSELRN  180
ALQAHITDIE LRILVENGLN HYKNLFRMKT DAAKADVFYL ISGKWRTSVE RFFLWIGGFR  240
PSELLNVLMS QLQPLTDQQL VDVCNLSQSS RQAEDALTQG IDKLQQTLSQ SIAADVMGDG  300
GYGDQMADAI KSLEALEGFV NQADHLRQQT LRHMSRILTI RQAARGLLAL GEYFHRLRAL  360
SSLWAARPCE PA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF145013	0.0	EF145013.1 Populus trichocarpa clone WS0111_I20 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011027648.1	0.0	PREDICTED: transcription factor TGA7
Swissprot	Q93ZE2	1e-161	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A9PA07	0.0	A9PA07_POPTR; Uncharacterized protein
STRING	POPTR_0002s09130.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-163	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]