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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG033308.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | SBP | ||||||||
Protein Properties | Length: 331aa MW: 36488.7 Da PI: 8.3594 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.2 | 4.3e-42 | 93 | 170 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C v+gC++dls++++yhrrhkvCe hsk+p+v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ CCG033308.1 93 MCLVDGCNSDLSTCRDYHRRHKVCELHSKTPQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 170 6**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.9E-34 | 88 | 155 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.983 | 91 | 168 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.35E-39 | 92 | 173 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.4E-31 | 94 | 167 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MDWNLKAPSW DLTEFEQGAV PSICIDAFGR PTNFGANRTG GGFSIDLKLG RVGNSSDESM 60 VNWKQPGVSK LESSPSGSTK RARGANIGAQ VAMCLVDGCN SDLSTCRDYH RRHKVCELHS 120 KTPQVTIGGQ KQRFCQQCSR FHSLEEFDEG KRSCRKRLDG HNRRRRKPQP DPFSHPPSFL 180 PNHQGTQIFP FSSSHAYHST AVVNSTWSGV ANTEADGGHY NLHQLPDKQN LFLGSSSNSY 240 KGGKPFPFLQ CDNPCLNNQT SSEASVCLPL PRAIAFPGSS GASSHSMFCD RLTTQVQDSD 300 CALSLFCHQH RRMHGETPCC NDIAQSPFRI P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-28 | 84 | 167 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 167 | KRSCRKRLDGHNRRRRKP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002322273.3 | 0.0 | squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_024441807.1 | 0.0 | squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_024441808.1 | 0.0 | squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_024441809.1 | 0.0 | squamosa promoter-binding-like protein 13A | ||||
TrEMBL | A0A2K1YBM5 | 0.0 | A0A2K1YBM5_POPTR; SBP family protein | ||||
STRING | POPTR_0012s10260.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2591 | 33 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 3e-70 | SBP family protein |