PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG033208.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 89aa MW: 10267.4 Da PI: 7.3536 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.8 | 1.2e-08 | 14 | 58 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ E +l+ +a +++ ++ +W Ia+ +g ++++++k ++ CCG033208.1 14 SWTPRENKLFEKALALFDKDtpdRWQNIAKAVGGVKSAEEVKRHY 58 7********************************668********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-4 | 7 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.819 | 10 | 66 | IPR017884 | SANT domain |
SMART | SM00717 | 2.2E-8 | 11 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.21E-12 | 13 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.43E-7 | 14 | 58 | No hit | No description |
Pfam | PF00249 | 5.0E-7 | 14 | 58 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MSSSYQTPRN SSSSWTPREN KLFEKALALF DKDTPDRWQN IAKAVGGVKS AEEVKRHYEI 60 LIEDLKYIES GRVPIPNYRS CSSTNEEER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-31 | 9 | 83 | 5 | 78 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011037518.1 | 7e-61 | PREDICTED: protein RADIALIS-like 4 isoform X1 | ||||
Swissprot | Q1A173 | 2e-32 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A3N7F137 | 1e-53 | A0A3N7F137_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s16320.1 | 2e-54 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 6e-35 | RAD-like 6 |