PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG033207.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 460aa MW: 50983.2 Da PI: 7.1673

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG033207.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.4e-09	241	288	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + + Ka +L + ++Y++sLq CCG033207.1 241 SHSLAERVRREKISERMKYLQDLVPGC----NNITGKAGMLDEIINYVQSLQ 288 8************************....89****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.16E-17	235	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.97E-10	235	292	No hit	No description
PROSITE profile	PS50888	15.339	237	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.3E-17	237	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-6	241	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-8	243	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MINKALLSAG GDNMLHCTDM TVLDRQRARI KWQQEQQQHQ VQLPQQEISY FCELNRVFQQ 60 AGFHEGGLSE VVTRSVKPDP GLVDNRWHND HVVGFGVGPP YTNGLGFELN YGAISRTSSC 120 PPGLAAAATV TATVRGAESV VSDKISSGVG KESTKKRKFD KVVAEEDTRD KRIKGRAEEG 180 ESNTSEKNNN KSSSSNNNSN KNNNSNKDNS AETSKDNSKV TEVQKPDYIH VRARRGQATD 240 SHSLAERVRR EKISERMKYL QDLVPGCNNI TGKAGMLDEI INYVQSLQRQ VEFLSMKLAA 300 VNPRLDFNID SLFAKEAFPA CSTNFPTFGI SPDMTNAAYL QFNPAQQQLV SCCGLDMGIN 360 PPDMGLRRTT STPVSIPETF LDSSCFTVMR CSLFISVQLS LFSYNLVSSN LISQQIQAPP 420 TWDADLHNLY NVVFEQGRQT TFPVQPFTGS VEASNLKMEM

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MINKALLSAG GDNMLHCTDM TVLDRQRARI KWQQEQQQHQ VQLPQQEISY FCELNRVFQQ  60
AGFHEGGLSE VVTRSVKPDP GLVDNRWHND HVVGFGVGPP YTNGLGFELN YGAISRTSSC  120
PPGLAAAATV TATVRGAESV VSDKISSGVG KESTKKRKFD KVVAEEDTRD KRIKGRAEEG  180
ESNTSEKNNN KSSSSNNNSN KNNNSNKDNS AETSKDNSKV TEVQKPDYIH VRARRGQATD  240
SHSLAERVRR EKISERMKYL QDLVPGCNNI TGKAGMLDEI INYVQSLQRQ VEFLSMKLAA  300
VNPRLDFNID SLFAKEAFPA CSTNFPTFGI SPDMTNAAYL QFNPAQQQLV SCCGLDMGIN  360
PPDMGLRRTT STPVSIPETF LDSSCFTVMR CSLFISVQLS LFSYNLVSSN LISQQIQAPP  420
TWDADLHNLY NVVFEQGRQT TFPVQPFTGS VEASNLKMEM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011037513.1	0.0	PREDICTED: transcription factor bHLH63 isoform X2
TrEMBL	A0A2K2AV70	0.0	A0A2K2AV70_POPTR; BHLH family protein
STRING	POPTR_0004s16330.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3618	34	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	2e-59	cryptochrome-interacting basic-helix-loop-helix 1