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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
CCG033114.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
AP2 |
Protein Properties |
Length: 506aa MW: 55560.9 Da PI: 6.4573 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
CCG033114.1 | genome | LZU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 47.6 | 4.3e-15 | 219 | 278 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g
CCG033114.1 219 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 278
57*******************666664478446*************************98 PP
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2 | AP2 | 50.2 | 6.5e-16 | 321 | 372 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g
CCG033114.1 321 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 372
57****************988532...5************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010080 | Biological Process | regulation of floral meristem growth |
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity |
GO:0035265 | Biological Process | organ growth |
GO:0048364 | Biological Process | root development |
GO:0060772 | Biological Process | leaf phyllotactic patterning |
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 506 aa
Download sequence Send
to blast |
MAPATNWLSF SLSPIEMLRS SESQFMSYES SSSASPHYLF DNFYADGWAN PKESQVTTTT 60 MAESSNILTS FIGPESQHQQ VPKLEDFLGD SSSSINIRYS DNSQTETQDS SLTHIYDHQG 120 SAAAYFNEQQ DLKAIAGFQA FSTNSGSEVD DSASIAPTQL GGIESTGNEL GFSNNAALSL 180 RVNNDTSNNQ GGSTEKLAIA SADNDCSKKI ADTFGQRTSI YRGVTRHRWT GRYEAHLWDN 240 SCRREGQARK GRQVYLGGYD KEEKAARAYD LAALKYWGPT ATTNCPVSNY TKELEDMKYV 300 SKQEFIASLR RSSSGFSRGA SIYRGVTRHH QQGRWQARIG RVAGNKDLYL GTFATEEEAA 360 EAYDIAAIKF RGLNAVTNFE MNRYNVEAIM KSALPVGGAA KRLKTSLDAE HKPNVSDNHQ 420 PQPRCNSYST NNNISFAAIQ PASTAAPCGI TFDASTALYH HNLVHHLQTT NNFAASDSSG 480 PTSSMATAMT TLPQTAEYFA WPHQTY
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Publications
? help Back to Top |
- Krizek BA
Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers. BMC Res Notes, 2015. 8: p. 556 [PMID:26459062] - Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis. Plant Physiol., 2016. 170(1): p. 283-93 [PMID:26537561] - Krizek BA, et al.
RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways. Plant Physiol., 2016. 171(3): p. 2069-84 [PMID:27208279] - Du Y,Scheres B
PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398]
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