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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG033114.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | AP2 | ||||||||
Protein Properties | Length: 506aa MW: 55560.9 Da PI: 6.4573 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.6 | 4.3e-15 | 219 | 278 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g CCG033114.1 219 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 278 57*******************666664478446*************************98 PP | |||||||
2 | AP2 | 50.2 | 6.5e-16 | 321 | 372 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g CCG033114.1 321 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 372 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.09E-16 | 219 | 288 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.38E-21 | 219 | 288 | No hit | No description |
Pfam | PF00847 | 6.8E-12 | 219 | 278 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.558 | 220 | 286 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.1E-15 | 220 | 287 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-27 | 220 | 292 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-6 | 221 | 232 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-18 | 321 | 381 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.41E-11 | 321 | 380 | No hit | No description |
Pfam | PF00847 | 2.8E-10 | 321 | 372 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-18 | 322 | 380 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.177 | 322 | 380 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.8E-31 | 322 | 386 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-6 | 362 | 382 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010080 | Biological Process | regulation of floral meristem growth | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0035265 | Biological Process | organ growth | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MAPATNWLSF SLSPIEMLRS SESQFMSYES SSSASPHYLF DNFYADGWAN PKESQVTTTT 60 MAESSNILTS FIGPESQHQQ VPKLEDFLGD SSSSINIRYS DNSQTETQDS SLTHIYDHQG 120 SAAAYFNEQQ DLKAIAGFQA FSTNSGSEVD DSASIAPTQL GGIESTGNEL GFSNNAALSL 180 RVNNDTSNNQ GGSTEKLAIA SADNDCSKKI ADTFGQRTSI YRGVTRHRWT GRYEAHLWDN 240 SCRREGQARK GRQVYLGGYD KEEKAARAYD LAALKYWGPT ATTNCPVSNY TKELEDMKYV 300 SKQEFIASLR RSSSGFSRGA SIYRGVTRHH QQGRWQARIG RVAGNKDLYL GTFATEEEAA 360 EAYDIAAIKF RGLNAVTNFE MNRYNVEAIM KSALPVGGAA KRLKTSLDAE HKPNVSDNHQ 420 PQPRCNSYST NNNISFAAIQ PASTAAPCGI TFDASTALYH HNLVHHLQTT NNFAASDSSG 480 PTSSMATAMT TLPQTAEYFA WPHQTY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00504 | DAP | Transfer from AT5G10510 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011021856.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 | ||||
Swissprot | Q52QU2 | 0.0 | AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | A0A3N7F903 | 0.0 | A0A3N7F903_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s14210.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4810 | 31 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.2 | 1e-171 | AINTEGUMENTA-like 6 |
Publications ? help Back to Top | |||
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