PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG033012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | G2-like | ||||||||
Protein Properties | Length: 296aa MW: 33110.2 Da PI: 7.7497 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.7 | 2.7e-33 | 19 | 72 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+a+e+LGG++kAtPk +l++m+vkgLt++hvkSHLQ+YR+ CCG033012.1 19 PRLRWTPELHHCFVHAIERLGGQDKATPKLVLQMMDVKGLTISHVKSHLQMYRS 72 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-32 | 15 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.25 | 15 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.66E-16 | 17 | 73 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.6E-24 | 19 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.3E-9 | 20 | 71 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MGSCGRSGAV RQYVRSKVPR LRWTPELHHC FVHAIERLGG QDKATPKLVL QMMDVKGLTI 60 SHVKSHLQMY RSMRSGDLGR LDRSSTQQKR QSFDVYHECV EEVKAIEESD SHSMYRPLSS 120 KRARIETKSS LSEEFLQCSQ GICETISNPY SFDDYAGVKE EVNGVGFKWE QVHSKPQSTA 180 FSLPHDLYNL NPLKREGEES DFLKIAKLEG RKCKPEKLYT PEVTGSGRAE DGPVDCELSL 240 ALSLPQPSSH RSDSSSTSEI SEAFSSYSRS NFKDCSGFST GKRNINLDLS IALCGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 9e-19 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-19 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-19 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-19 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011021697.1 | 0.0 | PREDICTED: putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A2K1YRP7 | 0.0 | A0A2K1YRP7_POPTR; Uncharacterized protein | ||||
STRING | XP_002521884.1 | 1e-144 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5539 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 8e-36 | G2-like family protein |