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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG033007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 530aa MW: 57506.8 Da PI: 9.6044 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.3 | 2.7e-05 | 54 | 76 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H CCG033007.1 54 FICEVCNKGFQREQNLQLHRRGH 76 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00025 | 130 | 152 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ CCG033007.1 130 WKCEKCSKRYAVQSDWKAHSKTC 152 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12171 | 1.9E-5 | 53 | 76 | IPR022755 | Zinc finger, double-stranded RNA binding |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 54 | 76 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0052 | 54 | 76 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.81E-7 | 54 | 76 | No hit | No description |
PROSITE profile | PS50157 | 10.99 | 54 | 76 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 56 | 76 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 150 | 95 | 125 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.1E-5 | 118 | 151 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.81E-7 | 125 | 150 | No hit | No description |
SMART | SM00355 | 130 | 130 | 150 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
MAAASSSAPF FGRAREEHQN QIIQQHSSTA TSSTVPTTGP LKKRRNQPGT PSKFICEVCN 60 KGFQREQNLQ LHRRGHNLPW KLKQKTTKEV KRKVYLCPEP TCVHHDPSRA LGDLTGIKKH 120 YFRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTREYRCD CGTLFSRRDS FITHRAFCDA 180 LAQESARHPT SLNTIGSHLY GNNHMSLGLS QVGSQISHLQ DHHPSDNNML RLGSAGAANF 240 EHLIPPPNPS SMPMMPPSGF FMGDANQGPF PNKCLHGLMQ LPDLQSNTNN PSSASNLFNF 300 GFFSNNSNTG RTSNNDNANT GSTTTNFGSP GLLNANQFNN VNGAGHRTSV FPTNMSGDHV 360 GSAMSSLFNT SMQQENITPH VSATALLQKA AQMGSTTSSN SPSGLLRSLG SSSTTGAKSI 420 RPLVSTNFGS SFSNANVCES IETHMESESQ LQGLMNSLAN GSSSIFGNEQ DNSYTGFDSS 480 SFSKADEGNM HQGLAGSDKL TLDFLGVGGR VRNIGGGFPQ RQQQNGINNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-34 | 126 | 187 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 3e-34 | 126 | 187 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU278645 | 0.0 | GU278645.1 Populus balsamifera isolate STL13 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278646 | 0.0 | GU278646.1 Populus balsamifera isolate INU03 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278648 | 0.0 | GU278648.1 Populus balsamifera isolate POR11 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278650 | 0.0 | GU278650.1 Populus balsamifera isolate KUU07 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278652 | 0.0 | GU278652.1 Populus balsamifera isolate FBK13 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278653 | 0.0 | GU278653.1 Populus balsamifera isolate FBK13 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278654 | 0.0 | GU278654.1 Populus balsamifera isolate FRE01 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278655 | 0.0 | GU278655.1 Populus balsamifera isolate FRE01 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278656 | 0.0 | GU278656.1 Populus balsamifera isolate GAL12 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278657 | 0.0 | GU278657.1 Populus balsamifera isolate GAL12 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278658 | 0.0 | GU278658.1 Populus balsamifera isolate GIL14 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278659 | 0.0 | GU278659.1 Populus balsamifera isolate GIL14 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278660 | 0.0 | GU278660.1 Populus balsamifera isolate LOV02 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278661 | 0.0 | GU278661.1 Populus balsamifera isolate LOV02 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278662 | 0.0 | GU278662.1 Populus balsamifera isolate RNA13 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278663 | 0.0 | GU278663.1 Populus balsamifera isolate RNA13 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278664 | 0.0 | GU278664.1 Populus balsamifera isolate STO11 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278665 | 0.0 | GU278665.1 Populus balsamifera isolate STO11 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278666 | 0.0 | GU278666.1 Populus balsamifera isolate WHR03 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278667 | 0.0 | GU278667.1 Populus balsamifera isolate WHR03 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011021690.1 | 0.0 | PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 | ||||
Swissprot | Q9ZUL3 | 1e-126 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | A0A2K1YRN5 | 0.0 | A0A2K1YRN5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s10940.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1536 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-105 | indeterminate(ID)-domain 5 |
Publications ? help Back to Top | |||
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