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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG032887.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 274aa MW: 30819.4 Da PI: 6.5255 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.7 | 2.5e-17 | 35 | 84 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+ ++ + r +lg+f taeeAa+a+++a+ l+g CCG032887.1 35 KFVGVRQRP-SGRWVAEIKYTTQ---NIRMWLGTFETAEEAARAYDEAACLLRG 84 799******.7******888332...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.3E-13 | 35 | 84 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.64E-30 | 35 | 91 | No hit | No description |
SuperFamily | SSF54171 | 1.57E-18 | 35 | 92 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.177 | 35 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-26 | 35 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.5E-33 | 35 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-8 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-8 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MEIHFQQEKK RRKASMPVSK TSKFKGISRP SSSNKFVGVR QRPSGRWVAE IKYTTQNIRM 60 WLGTFETAEE AARAYDEAAC LLRGSNTRTN FITRVSLDSP LASRIRNLLN NKRRDKQQQS 120 EEETSEVSTP PTSTTITKST ITTTSCSSSS ISSCGMSTDS HSNSSSVHET DILFDDAYKP 180 DLSNCIEEFK WVSSQSDLSW GFGPVFDRFA FSQEVLDFPK SVVSPGTSDL GFSEFDKMKV 240 ERQISASLYA MNGVQEYMET IHDPIEALWD LPPL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 12 | KKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011021467.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-11-like | ||||
Refseq | XP_011021468.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-11-like | ||||
Swissprot | A0A1X9PY88 | 1e-106 | ERN1_LOTJA; Ethylene-responsive transcription factor ERN1 | ||||
TrEMBL | B9IPR2 | 1e-167 | B9IPR2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s05170.1 | 1e-168 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3341 | 30 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 4e-25 | related to AP2 11 |
Publications ? help Back to Top | |||
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